Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000470-TA|BGIBMGA000470-PA|IPR002933|Peptidase M20,
IPR011650|Peptidase dimerisation, IPR010159|N-acyl-L-amino-acid
amidohydrolase, IPR001261|ArgE/dapE/ACY1/CPG2/yscS
         (398 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   3.8  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   3.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   5.1  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 371 AHNERVHADMYKKGIDIMEKVLE 393
           A  E ++ D +KK ID ++KVL+
Sbjct: 128 ARFEDINMDYFKKCIDPVDKVLQ 150


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 371 AHNERVHADMYKKGIDIMEKVLE 393
           A  E ++ D +KK ID ++KVL+
Sbjct: 128 ARFEDINMDYFKKCIDPVDKVLQ 150


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 156 SESQEFKNLNVGFGMDESAPSPEPDELIVFNGERTSRQVKVTCKGEPGHGALLDIDNAGE 215
           +E+  F +   G+G+    P P P       G   S  V V C G  G+           
Sbjct: 186 AETASFHHDAAGYGLRNYGPEPVPSTPYPPPGSLGSMGVSVPC-GTSGNPLEWTGQVTVR 244

Query: 216 KFYTILSKFMSLRAEEK 232
           K     SKF +L  E++
Sbjct: 245 KKRKPYSKFQTLELEKE 261


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,362
Number of Sequences: 317
Number of extensions: 4176
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 398
length of database: 114,650
effective HSP length: 58
effective length of query: 340
effective length of database: 96,264
effective search space: 32729760
effective search space used: 32729760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)