GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000470-TA|BGIBMGA000470-PA|IPR002933|Peptidase M20,
IPR011650|Peptidase dimerisation, IPR010159|N-acyl-L-amino-acid
amidohydrolase, IPR001261|ArgE/dapE/ACY1/CPG2/yscS
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    68   2e-12
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    46   9e-06
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    42   2e-04
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    29   1.2  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    26   8.1  

>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 13/157 (8%)

Query: 7   DEEIMRFREYLKIPSV----QPDV-DYSACVEFLTAQARLMNLPVMVYEIVPKKPV---- 57
           ++ ++RF+E L+IP+V      DV D      F   Q ++  L   +++ +  + V    
Sbjct: 118 NDSLVRFQELLRIPTVCYDDMGDVGDDDRFDIFAVFQDKVRELYPNIFKKLKVEYVNTYG 177

Query: 58  VVVTLQGLQPDLPSILLNSHMDVVPVNE---ELWTYPPFEAKLTDDGFIYARGSQDMKST 114
           +++TL+G   DL  ++L  H DVVPVN+   + W +PPF A    +G +Y+RG+ D K++
Sbjct: 178 LLITLEGSNKDLKPLVLMGHQDVVPVNQASLDRWYFPPFSATY-HNGHVYSRGAADDKNS 236

Query: 115 GMIYLEAISRFNKSGKRLKRTTHVSFVPDEEIGSTYG 151
            +  LEA+     S  + ++T   SF  DEE+    G
Sbjct: 237 VVAILEALEILAISDYKPEQTVIASFGFDEEVSGYRG 273


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 15/158 (9%)

Query: 5   ENDEEIMRFREYLKIPSVQPDVDYSACV---------EFLTAQARLMNLPVMVYEI---- 51
           + DE + R    + IPSV  DV     V         EF    A++    +  +++    
Sbjct: 13  KKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKRDIGYHQMDGQD 72

Query: 52  VPKKPVVVVTLQGLQPDLPSILLNSHMDVVPVN-EELWTYPPFEAKLTDDGFIYARGSQD 110
           VP  P+V+    G  P   ++L+ +H DV P + E+ W+  PF   + + G ++ RG+ D
Sbjct: 73  VPLPPIVLGQY-GNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNKGRMFGRGATD 131

Query: 111 MKSTGMIYLEAISRFNKSGKRLKRTTHVSFVPDEEIGS 148
            K   + ++ AI    + G        + F   EE GS
Sbjct: 132 DKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGS 169


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 17/200 (8%)

Query: 81  VPVNEELWTYPPFEAKLTDDGFIYARGSQDMKSTGMIYLEAISRFNKSGKRLKRTTHVSF 140
           V +   + T  PF     +   I+ RGS D KS+    + A+      GK  +    + F
Sbjct: 123 VVLTSHIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIFAMLELMSEGKVQEGDLSLLF 182

Query: 141 VPDEEIGSTYGMKAFSESQEFKNLNVGFGMDESAPSPEPDELIVFNGERTSRQVKVTCKG 200
           V  EEI    GMK  +       LN  +   E A   EP E  +  G + + +  V   G
Sbjct: 183 VVGEEIDG-IGMKTVA-----NKLNADW---EVAIFGEPTENKLGVGHKGNFRFDVYAHG 233

Query: 201 EPGHGALLDIDNAGEKFYTILSKFMSLRAEEKRKTLPPINTFIGDVTTINLTQVEGGVMV 260
           +  H          E F  I  +F+  +  +   T  P +  +G  +TIN+  +EGG   
Sbjct: 234 KACHSGY-----PQEGFSAI--EFLLRQCVKLMDTDLPKSKLLGP-STINIGTIEGGAAA 285

Query: 261 NVLPEVLSATFDVRIAPDVD 280
           N+L     A   +R+A D++
Sbjct: 286 NILAAEAKAEVFIRVAEDIE 305


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 46  VMVYEIVPKKPVVVVTLQGLQPDLPSILLNSHMDVVPVNEELWTYPPFEAKLTDDGFIYA 105
           V + EI+ +K  V +  + +  DL  +LLNS +   P N +  +   FEA      +++ 
Sbjct: 337 VRLLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFTPGNIKHLSKQIFEAL----AYLHH 392

Query: 106 RG--SQDMKSTGMIYLE---------AISRFNKSGKRLKRTTHV 138
           RG   +D+K + ++             ++RFN S K    T  V
Sbjct: 393 RGVLHRDIKGSNILLNNNGDLKFADFGLARFNTSSKSANYTNRV 436


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex
          subunit Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 41 LMNLPVMVYEIVPKKP-VVVVTLQGLQPDLPSILLN 75
          LM LP + YE+  K P   VVTL+     L ++L N
Sbjct: 12 LMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLAN 47


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,380
Number of Sequences: 5004
Number of extensions: 85847
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 8
length of query: 398
length of database: 2,362,478
effective HSP length: 74
effective length of query: 324
effective length of database: 1,992,182
effective search space: 645466968
effective search space used: 645466968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)