Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000470-TA|BGIBMGA000470-PA|IPR002933|Peptidase M20,
IPR011650|Peptidase dimerisation, IPR010159|N-acyl-L-amino-acid
amidohydrolase, IPR001261|ArgE/dapE/ACY1/CPG2/yscS
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827... 209 3e-54
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 190 1e-48
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 40 0.003
07_01_0992 - 8366821-8367230,8367814-8367910,8368076-8368390,836... 36 0.043
07_01_0990 - 8354014-8354397,8354569-8354697,8354830-8355144,835... 34 0.23
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 31 1.2
10_08_0028 - 14262607-14262783,14262886-14262932,14263014-142632... 31 2.1
03_06_0594 + 34950892-34951167,34952241-34952366,34952707-349530... 29 4.9
>08_02_1223 -
25381462-25381575,25381822-25382061,25382570-25382707,
25383397-25383849,25384528-25385010
Length = 475
Score = 209 bits (510), Expect = 3e-54
Identities = 144/434 (33%), Positives = 207/434 (47%), Gaps = 47/434 (10%)
Query: 10 IMRFREYLKIPSVQPDVDYSACVEFLTAQARLMNLPVMVYEIVPKKPVVVVTLQGLQPDL 69
+ RFREYL+I + QP DY+A V FL QA L E+V KP++++ G +P L
Sbjct: 31 VSRFREYLRIDTAQPAPDYAAAVAFLRGQAGAAGLEARTLELVAGKPLLLLRWPGRRPSL 90
Query: 70 PSILLNSHMDVVPVNEELWTYPPFEAKLTD-DGFIYARGSQ---DMKSTGMIYLEAISRF 125
PS+LLNSH DVVP W +PPF A L + G IYARGSQ D S ++ +
Sbjct: 91 PSLLLNSHTDVVPSEPHKWDHPPFSAALDEASGRIYARGSQARFDFLSPRLLKISIFGCL 150
Query: 126 NKSG-----------------KRLKRTTHVSFVP----------DEEIGSTYGMKAFSES 158
S + ++R F+P DEEIG G++AF S
Sbjct: 151 VNSSYVVSMFLDMKCVGMQYLEAIRRLRSAGFIPDRNIYLTFVPDEEIGGHEGIEAFVAS 210
Query: 159 QEFKNLNVGFGMDESAPSPEPDELIVFNGERTSRQVKVTCKGEPGHGALLDIDNAGEKFY 218
+EFK++NVG +DE SP +E VF GER+ + + KG PGHGA L +A E
Sbjct: 211 KEFKDMNVGLVLDEGLASP-GEEYRVFYGERSPWWLTIKAKGAPGHGAKLYDGSAMENLM 269
Query: 219 TILSKFMSLRAEEKRKTLPPINTFIGDVTTINLTQVEGGV------MVNVLPEVLSATFD 272
+ R + GDV ++N ++ G ++N+ P D
Sbjct: 270 KSVEAIRRFRTSQFDLVKSGAKA-EGDVVSVNFAYLKAGTPTPTGFVMNLQPSEAEIGLD 328
Query: 273 VRIAPDVDLDEFGNMII-PWAGIGEGVTFEYLVKNPQVYS------TKTDGSVPFWNSLV 325
+R+ P V + + WA +TFE+ K + + T D S +W
Sbjct: 329 IRLPPSVHTEALEKRLAEEWAPSSRNLTFEFKQKTSVLDNFGKPAVTPADSSNVWWALFE 388
Query: 326 EVIEKMGLKL-KCVTCPGATDARFVRLHNIPVINFTPILNTPLYVHAHNERVHADMYKKG 384
E +++ G KL K P +TDAR+ R+ IP F+P+ NTP+ +H HNE + D Y KG
Sbjct: 389 EAVKRAGGKLGKPEIFPASTDARYFRVLGIPAFGFSPMTNTPILLHDHNEFLSKDEYLKG 448
Query: 385 IDIMEKVLEALANV 398
I I E ++ LA +
Sbjct: 449 IGIYESIIRTLATL 462
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 190 bits (464), Expect = 1e-48
Identities = 129/399 (32%), Positives = 193/399 (48%), Gaps = 38/399 (9%)
Query: 9 EIMRFREYLKIPSVQPDVDYSACVEFLTAQARLMNLPVMVYEIVP--KKPVVVVTLQGLQ 66
+I RF++YL+I + P DY+ FL A + L P KP++++T G
Sbjct: 40 QIGRFQDYLRIRTAHPSPDYAGAAAFLLPYAASLGLRAATLHFTPCKSKPLLLLTWPGTD 99
Query: 67 PDLPSILLNSHMDVVPVNEELWTYPPFEA-KLTDDGFIYARGSQDMKSTGMIYLEAISRF 125
P LPS+LLNSH+D VP E W +PPF A + G +YARG+QD K + YLEAI
Sbjct: 100 PSLPSLLLNSHLDSVPAEPEQWLHPPFAAHRDAATGRVYARGAQDDKCLPIQYLEAIRGL 159
Query: 126 NKSGKRLKRTTHVSFVPDEEIGSTYGMKAFSESQEFKNLNVGFGMDESAPSPEPDELIVF 185
+G RT H+S VPDEEIG G + F++S+EF++LNVGF +DE S DE VF
Sbjct: 160 RDAGFAPTRTLHISLVPDEEIGGADGFEKFAQSEEFRDLNVGFMLDEGQASLT-DEFRVF 218
Query: 186 NGERTSRQVKVTCKGEPGHGALLDIDNAGEKFYTILSKFMSLRAEEKRKTLPPINTFIGD 245
G+R ++ V G PGHG+ L A E + R E + + G+
Sbjct: 219 YGDRLVWRLIVKATGAPGHGSKLFDGAAVENLMDCVETIAGFR-EAQFGMVKSGKRGPGE 277
Query: 246 VTTINLTQVEGGV------MVNVLPEVLSATFDVRIAPDVDLDEFGNMIIP-WAGIGEGV 298
V ++N ++ G ++N+ P FD R+ P D++ I WA + +
Sbjct: 278 VVSVNPVYMKAGTPSPTGFVMNMQPSEAEVGFDFRLPPTEDVEHIIRRIKEEWAPAHKNL 337
Query: 299 TFEYLVKNPQVYSTKTDGSVPFWNSLVEVIEKMGLKLKCVTCPGATDARFVRLHNIPVIN 358
T++ +I G K TD+RF+R IP +
Sbjct: 338 TYK------------------------AIISAGGKLAKPEILSSTTDSRFIRQLGIPALG 373
Query: 359 FTPILNTPLYVHAHNERVHAD--MYKKGIDIMEKVLEAL 395
F+P+ NTP+ +H +NE H ++ G ++M K+ + L
Sbjct: 374 FSPMTNTPILLHDNNEVNHLGLLLFNLGYNVMLKLRDVL 412
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 58 VVVTLQGLQPDLPSILLNSHMDVVPVNEELWTYPPFEAKL--TDDGFIYARGSQDMKSTG 115
V+V G P + HMDVVP N + W + PF D + RG+ D
Sbjct: 80 VIVEYPGTVPGRAISFVGMHMDVVPANPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHV 139
Query: 116 MIYLEAISRFNKSGKRLKRTTHVSFVPDEE 145
+ + + R + LK + F+ +EE
Sbjct: 140 ALVAQLMRRLGEVKPVLKHSVIAVFIANEE 169
>07_01_0992 -
8366821-8367230,8367814-8367910,8368076-8368390,
8368589-8368714,8369636-8370004
Length = 438
Score = 36.3 bits (80), Expect = 0.043
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 20/216 (9%)
Query: 52 VPKKPVVVVTLQGLQPDLPSILLNSHMDVVPVNEELWTYPPFEAKLTDDGFIYARGSQDM 111
V + VV G D P + L + MD +PV E + +E K ++G ++A G
Sbjct: 91 VARTGVVATIAGGGGGDGPVVALRADMDALPVQELV----DWEHKSQENGKMHACGHD-- 144
Query: 112 KSTGMIYLEAISRFNKSGKRLKRTTHVSFVPDEEIGSTYGMKAFSESQEFKNLNVGFGMD 171
T M+ L A K LK T + F P EE GS E +++ FGM
Sbjct: 145 AHTAML-LGAAKLLQKRKNELKGTVKLVFQPAEE-GSAGAYYVLQEG-VLDDVSAMFGMH 201
Query: 172 ESAPSPEPDELIVFNG--ERTSRQVKVTCKGEPGHGALLDIDNAGEKFYTILSKFMSLRA 229
P+ + G TS + T G+ GH A +A + + +SL+
Sbjct: 202 VD-PALPVGVVAARPGPFAATSGRFLATITGKGGHAAF--PHDAIDPVVAASNAILSLQQ 258
Query: 230 EEKRKTLPPINTFIGDVTTINLTQVEGGVMVNVLPE 265
R+ + P+ + +++T V+GG NV+P+
Sbjct: 259 IVARE-IDPLQGAV-----VSITFVKGGEAYNVIPQ 288
>07_01_0990 -
8354014-8354397,8354569-8354697,8354830-8355144,
8355448-8355573,8356793-8357206
Length = 455
Score = 33.9 bits (74), Expect = 0.23
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 74 LNSHMDVVPVNEELWTYPPFEAKLTDDGFIYARGSQDMKSTGMIYLEAISRFNKSGKRLK 133
L + MD +P+ E + +E K + G ++A G D +T ++ + + K LK
Sbjct: 128 LRADMDALPLQELV----DWEHKSEESGKMHACG-HDAHTTMLLGAAKLLQSQKDD--LK 180
Query: 134 RTTHVSFVPDEE--IGSTYGMK--AFSESQEFKNLNVGFGMDESAPSPEPDELIVFNGER 189
T + F P EE G+ Y ++ + L+V + + P + +G
Sbjct: 181 GTVKLVFQPAEEGYAGARYVLQEGVLDDVSAIFGLHVDPRIQVGTVTSRPGPFLAASG-- 238
Query: 190 TSRQVKVTCKGEPGHGALLDIDNAGEKFYTILSKFMSLRAEEKRKTLPPINTFIGDVTTI 249
+ T G+ GH A NA + T S +SL+ R+T P + I
Sbjct: 239 ---RFLATITGKGGHAA--GPHNAVDPILTASSAIVSLQQIVARETDPL------EAAVI 287
Query: 250 NLTQVEGGVMVNVLPEVLS 268
++T ++GG NV+PE +S
Sbjct: 288 SVTFMKGGDAYNVIPESVS 306
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 31.5 bits (68), Expect = 1.2
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 209 DIDNAGEKFYTILSKFMSLRAEEKRKTLPPINTFIGDVTTINLTQVEGGVMVNVLPEVLS 268
D+D+ + + S MS + P ++F+ N ++ GG +N EVL+
Sbjct: 615 DVDDVHKPSSAVRSGGMSEALDLNYSNQAPQSSFVQPAAESNAREI-GGSSMNGGEEVLN 673
Query: 269 ATFDVRIAPDVDLDEFGNMIIPWAGIGEGVTFEYLVKNPQVYSTKTDGSVPFWNSLVEVI 328
A AP D+ ++ + +G G + E + V KTD V E+
Sbjct: 674 A----ETAPAFARDQL-SLGVSGGSVGMGASHEAEIHGVDVSEHKTDSVVGDVEPAPELT 728
Query: 329 EKMGLKLKCVTCPGATD 345
E MG + PG D
Sbjct: 729 ENMGNTGESAPGPGMMD 745
>10_08_0028 -
14262607-14262783,14262886-14262932,14263014-14263281,
14263374-14263486,14264362-14264400,14264531-14264591,
14264685-14264834
Length = 284
Score = 30.7 bits (66), Expect = 2.1
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 135 TTHVSFVPDEEIGSTYGMKAFSESQEFKNLNVGFGMDESAPSPEPDELIVFNGERTSRQV 194
T ++ + D E+ + + + EFK+LN G G + S ++ V+ RT+R+V
Sbjct: 210 TDYLHGIQDNELQNLDKVANMLQCPEFKHLNSGDGQGNTDESCSLEQSGVY--RRTARRV 267
Query: 195 KVTCK 199
+TC+
Sbjct: 268 SLTCR 272
>03_06_0594 +
34950892-34951167,34952241-34952366,34952707-34953018,
34954005-34954133,34954259-34954660
Length = 414
Score = 29.5 bits (63), Expect = 4.9
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 23/211 (10%)
Query: 58 VVVTLQGLQPDLPSILLNSHMDVVPVNEELWTYPPFEAKLTDDGFIYARGSQDMKSTGMI 117
VV T+ G P L + MD +P+ E + +E K +DG ++A G M+
Sbjct: 66 VVATVAGAAGPGPVFALRADMDALPIQEMV----EWEFKSLEDGKMHACGHD--AHVAML 119
Query: 118 YLEAISRFNKSGKRLKRTTHVSFVPDE-EIGSTYGMK--AFSESQEFKNLNVGFGMDESA 174
L A + F P E G + +K ++Q ++V +
Sbjct: 120 -LVAAKLLQSRRDHFNGKVKLVFQPAEGGAGGYHVLKEGVLDDTQTIFAVHVATDLPAGV 178
Query: 175 PSPEPDELIVFNGERTSRQVKVTCKGEPGHGALLDIDNAGEKFYTILSKFMSLRAEEKRK 234
P + + T+ T G+ GH A + A + S +SL+ R+
Sbjct: 179 VGSRPGPFLAGSARFTA-----TITGKGGHAA--EPHLAVDPIVAASSAVLSLQQIVARE 231
Query: 235 TLPPINTFIGDVTTINLTQVEGGVMVNVLPE 265
T N G V +++T ++GG NV+PE
Sbjct: 232 T----NPLQGAV--VSVTTIKGGEAFNVIPE 256
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,417
Number of Sequences: 37544
Number of extensions: 528273
Number of successful extensions: 1071
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 10
length of query: 398
length of database: 14,793,348
effective HSP length: 84
effective length of query: 314
effective length of database: 11,639,652
effective search space: 3654850728
effective search space used: 3654850728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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