GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000469-TA|BGIBMGA000469-PA|IPR005061|Protein of unknown
function DUF292, eukaryotic
         (352 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 251 GVPNQPPIGYAMPP 264
           GVP   P+G A+PP
Sbjct: 114 GVPTLSPVGVALPP 127


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 274 SFLQPAHVPTPQPRSRAPPSNYFPELPELPSV-PSDLVLP 312
           S   P  +PTP   +  P  N   E P++ S  P+  + P
Sbjct: 217 SVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNITP 256


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 278 PAHVPTPQPRSRAPPSNYFPELPELPSVPSDLVLPS 313
           PA  PT    +  PP    P LP  P  P  ++ PS
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINPS 197


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,099
Number of Sequences: 317
Number of extensions: 3729
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 352
length of database: 114,650
effective HSP length: 57
effective length of query: 295
effective length of database: 96,581
effective search space: 28491395
effective search space used: 28491395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)