GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000469-TA|BGIBMGA000469-PA|IPR005061|Protein of unknown
function DUF292, eukaryotic
         (352 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 222 PPTVQPFTYPTEASGGK-----AGGFIATPPASYGVPNQPPIGYAMPPGTDSKNFS 272
           PP ++PFT+    S G       G     PP +          + +PP   S N S
Sbjct: 610 PPIIEPFTFQEGLSEGMRTRTVCGVAAGDPPLTISWLKDGQSPFPLPPNLASANIS 665


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 140 NVNTISDKLKHKMSVHSPP 158
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 140 NVNTISDKLKHKMSVHSPP 158
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 140 NVNTISDKLKHKMSVHSPP 158
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 140 NVNTISDKLKHKMSVHSPP 158
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 140 NVNTISDKLKHKMSVHSPP 158
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 140 NVNTISDKLKHKMSVHSPP 158
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 140 NVNTISDKLKHKMSVHSPP 158
           NV  I D ++HK S  +PP
Sbjct: 412 NVLDIDDDIRHKNSAANPP 430


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 140 NVNTISDKLKHKMSVHSPP 158
           NV  I D ++HK S  +PP
Sbjct: 412 NVLDIDDDIRHKNSAANPP 430


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 85  LVTQMKELDEGLAEAISTLIWVAPRMHTDVQELKI 119
           L+TQ+ ELD+  A+  + L+  A   +T  Q + I
Sbjct: 540 LLTQVAELDQIYADTHAKLVQAAFEQNTTDQSMDI 574


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 151 KMSVHSPPKILVEKYLIEIAKNYNV 175
           ++ VH PP+ +VE   + + +N +V
Sbjct: 699 RLVVHVPPRWIVEPTDVSVERNKHV 723


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 267  DSKNFSNSFLQPAHVPTPQPRSRAPPS--NYFPELPELPSVPSD 308
            D K  +++  QP      Q + +      N++P+L  L +VP+D
Sbjct: 1439 DRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTD 1482


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 227 PFTYPTEASGGKAGGFIA 244
           PFTYP++ S  +A   IA
Sbjct: 151 PFTYPSKMSRRRAAVLIA 168


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,377
Number of Sequences: 429
Number of extensions: 5103
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 13
length of query: 352
length of database: 140,377
effective HSP length: 58
effective length of query: 294
effective length of database: 115,495
effective search space: 33955530
effective search space used: 33955530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)