GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000468-TA|BGIBMGA000468-PA|IPR000731|Sterol-sensing 5TM
box
         (1118 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    33   0.22 
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    32   0.39 
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   3.6  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    29   3.6  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    29   4.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    28   6.3  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   8.4  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    28   8.4  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 309 YCTQHNAVYNLLFYLIDSEAFSPLNNAQKFVKNTMLFLPLPRSDTVLPYYKKLENSNMSY 368
           + +    +YNLLF +  SE+F    N Q   KN+  F   P S  +LP Y  L  S MS+
Sbjct: 503 FASYDKGIYNLLFGMASSESFI---NGQIAEKNSFQF---PCS--ILPSYIDLFISLMSF 554

Query: 369 DNLVIPAIDFGL 380
            NL     D+ L
Sbjct: 555 KNLNFKLFDYNL 566


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 490 LDINISSAGETILVQILEETMRHSIVTIFITTLTTAVAFYASYVSYIPAINCFSVFAGTA 549
           LDI +    + +L  IL +    S+   F+ TL  A  F     SY+ A   F++F    
Sbjct: 203 LDIFLQECEDQLL--ILNDAREFSLT--FLNTLKLARDFPNEIRSYLEASKNFNIFKEKE 258

Query: 550 VLVNFVLMMTWLPISVFIVDVKLYAKKKTFLDLVHKNVNEMWE 592
           +L N  L   +L       DVK+    +T       N+ + W+
Sbjct: 259 ILRNICLDECYLKAYFSAEDVKVTTPFETLQQFDGDNILQQWK 301


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 818 IAALVVEFESIVPYSLSYSEMNKFFTE--VEKWTQT 851
           I+ L+ E ++++PY ++Y +  K FT+  VE W+ T
Sbjct: 294 ISLLLREAQNVLPYMITYRKFLKQFTQATVEVWSST 329


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1038 ESPSRERKPVSRVNSVSSGVPNLE-SHELEHLADSNRTNVTHSQSPSSVSA 1087
            +SP   + P SR +S SS  P  E +H  +H     + NV    SPS+V+A
Sbjct: 65   KSPFNGQWPFSRRSSQSSSHPVFEETHWSKHSKRPGKLNVLTPTSPSNVNA 115


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 825 FESIVPYSLSYSEMNKFFTEVEKWTQTELE 854
           F+ + P +LS +  N+ FT   +WT T LE
Sbjct: 681 FQQLHPLALSDNSSNQIFTGAWEWTSTVLE 710


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 513 SIVTIFITTLTTAVAFYASYVSYIP 537
           +I+ +FITTL T +AF    V ++P
Sbjct: 119 NIIVVFITTLLTCLAFAIELVLFLP 143


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 318 NLLFYLIDSEAFSPLNNAQKFVKNTMLF 345
           N+  + ID+ +F  L   + F++NT+ F
Sbjct: 922 NMTIFRIDANSFGALEEVEAFIRNTLCF 949


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
            Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 1039 SPSRERKPVSRVNSVSSGVPNLESHELE----HLADSNRTNVTH---SQSPSS-VSATTV 1090
            +PS     V   N V+  +PN+  H LE    H    N  ++ H   +  PS  +SA  V
Sbjct: 244  TPSYHEISVMNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRISAIEV 303

Query: 1091 VLH---DDYKTPHC 1101
            + H   D+ + P+C
Sbjct: 304  LTHPFFDELRDPNC 317


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,019,401
Number of Sequences: 5004
Number of extensions: 214672
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 10
length of query: 1118
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1038
effective length of database: 1,962,158
effective search space: 2036720004
effective search space used: 2036720004
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)