Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000468-TA|BGIBMGA000468-PA|IPR000731|Sterol-sensing 5TM
box
(1118 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283... 33 0.97
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385... 33 1.7
08_02_0597 + 19132492-19133230,19133827-19134371,19134563-19135264 32 2.2
08_02_0426 - 16987352-16987841,16989537-16989640 31 6.9
07_03_1601 - 28047764-28047845,28048043-28048078,28048209-280483... 31 6.9
07_01_0019 + 124594-126477 31 6.9
04_03_0810 - 19902049-19902069,19902195-19902400,19902523-199025... 31 6.9
08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081... 30 9.1
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 30 9.1
>04_04_1572 -
34527730-34527859,34528077-34528136,34528253-34528375,
34528506-34528960,34529343-34529876,34530638-34531501
Length = 721
Score = 33.5 bits (73), Expect = 0.97
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 818 IAALVVEFESIVPYSLSYSEMNKFFTEVEKWTQTELENAPAGMKCGWFLSDFQ-FYDLQR 876
+ A VV S++ Y E + +F +T L + G W DF+ +Y L R
Sbjct: 38 VLAFVVRLFSVLRYESMIHEFDPYFNY-----RTTLFLSDHGFSEFWNWFDFESWYPLGR 92
Query: 877 TLASGTIVALLLSAALGFIVLIPATLNF-VTSVCALTAMIFSSTVTI 922
+ L+++AAL +L +L + VC LTA F++ T+
Sbjct: 93 VVGGTLFPGLMVTAALLHRLLRALSLAVHIREVCVLTAPFFAANTTL 139
>12_01_0486 +
3854889-3855014,3855897-3856089,3856206-3856310,
3856541-3856629,3856720-3856872,3857047-3857181,
3857293-3857459,3858193-3858287,3858495-3858868,
3859101-3859374,3859464-3859531
Length = 592
Score = 32.7 bits (71), Expect = 1.7
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 482 VVYQENGVLDINISSAGETILVQILEETMRHSIVTIFITTLTTAVAF--YASYVSYIPAI 539
V Y +N ++ +N++ +L + M +S+ + T +T A F Y Y + I
Sbjct: 165 VKYNDNRIIHVNLTQESPKLLEAGKKLDMTYSVKWLQ-TDVTFARRFEVYLDYPFFEHQI 223
Query: 540 NCFSVFAGTAVLVNFVLMMTWLPISVFIVDVKLYAKKKTFLDLVHKNVNE 589
+ FS+F +++ +++ + + D YA++ L+ + ++VNE
Sbjct: 224 HWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVNE 273
>08_02_0597 + 19132492-19133230,19133827-19134371,19134563-19135264
Length = 661
Score = 32.3 bits (70), Expect = 2.2
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 869 FQFYDLQRTLASGTIVALLLSAALG-FIVLIPATLNFVTSVCALTAMIFSST---VTIAV 924
+ + L + + +L+ + ALG ++VL P L SVCA+T + F S V +
Sbjct: 553 YVYQSLSLVMMRSSATSLVAAFALGMYVVLAPVALTMAKSVCAITFLSFLSACMEVRRPL 612
Query: 925 LVINNWKLNI 934
+V N+ ++ +
Sbjct: 613 IVANSVRIRV 622
>08_02_0426 - 16987352-16987841,16989537-16989640
Length = 197
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 1062 SHELEHLADSNRTNVTHSQSPSSVSATTVVLHDDYKT 1098
SH +A + TN T+S SPS+ +AT V + T
Sbjct: 156 SHTTSDVASATNTNATNSSSPSAAAATAEVSKQPHTT 192
>07_03_1601 -
28047764-28047845,28048043-28048078,28048209-28048339,
28048695-28048967,28049039-28049166,28049250-28049369,
28049461-28049538,28049598-28049669,28049790-28049849,
28050096-28050217,28052918-28053048,28053382-28053534,
28053628-28053755,28053831-28053968,28054056-28054144,
28055741-28055878,28056870-28057102
Length = 703
Score = 30.7 bits (66), Expect = 6.9
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 325 DSEAFSPLNNAQKFVKNTMLFLPLPRSDTVLPYYKKLENSNMSYDNLVIPAI-DFGLKNA 383
DSE +P+ N F++ FLP+ D LP + K ++ +PA+ D G++
Sbjct: 395 DSEE-NPIENDPFFMETASPFLPVADGDVCLPEFGKFLIKELTSQGYPLPAVLDGGMRLV 453
Query: 384 -LFDIWIIEDTW 394
F+ +D W
Sbjct: 454 NTFENEFADDIW 465
>07_01_0019 + 124594-126477
Length = 627
Score = 30.7 bits (66), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 394 WLIALGGIFVFACVWIYTRSLILTLFLF 421
W + +G + VFACV+ T S+ LT L+
Sbjct: 258 WRVNIGWVLVFACVFASTESVYLTSVLY 285
>04_03_0810 -
19902049-19902069,19902195-19902400,19902523-19902559,
19902623-19902675,19903149-19903226,19903496-19903586,
19903773-19903917,19903988-19904227,19904313-19904523,
19904788-19905232
Length = 508
Score = 30.7 bits (66), Expect = 6.9
Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 746 ESFKMY-MSRRCIDNIDKINRSPCCETSKFPYKKEVFDFCIIKAMESLYQTPRELFMPGV 804
+S ++Y + +R N+ ++ + C KFP K++V DF + A L + P+ L + G
Sbjct: 271 KSMQLYPLLQRGQINLLYLDTTYCNPKYKFPPKEDVIDFAVRTAKRYLQKEPKTLIVVGA 330
Query: 805 --AGPK--FLRSAKPPIIAALVVEFESIVPYSLSYSEMNKFF-TEVEKWTQTE 852
G + +L +K + + ++ +S+++K ++ + WT +E
Sbjct: 331 YSIGKENVYLAISKALQVPIYTDASRRRILHAFGWSDLSKMICSDSQSWTFSE 383
>08_02_1208 + 25306367-25306567,25306709-25306931,25307930-25308175,
25308636-25308686,25308804-25309064,25309159-25309211,
25309292-25309661,25310068-25310882
Length = 739
Score = 30.3 bits (65), Expect = 9.1
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 994 LLRSNLLPYSQIGAFLVLIMTVSWTYATFFL--CSLLHIVGRSS-IKESPSRERKPVSRV 1050
+L+ +P++ I AF LI+T+SWTY L +++ R IK +R R P +
Sbjct: 520 ILQGGWVPFA-ITAFF-LIITLSWTYGRSKKGEYELANVMEREEFIKTVTTRSRVPGVCI 577
Query: 1051 --NSVSSGVPNLESHELEHLA 1069
+ +G+P + H ++H+A
Sbjct: 578 FCTDMMNGIPPIVRHYVQHVA 598
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 30.3 bits (65), Expect = 9.1
Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 17/148 (11%)
Query: 818 IAALVVEFESIVPYSLSYSEMNKFFTEVEKWTQTELENAPAGMKCGWFLSDFQFYDLQRT 877
+ A + S++ Y E + +F + TQ +N WF D +Y L R
Sbjct: 34 VLAFSIRLFSVIKYESVIHEFDPYFNF--RVTQFLSKNGIYEF-WNWF-DDRTWYPLGRV 89
Query: 878 LASGTIVALLLSAALGFIVLIPATLNF---VTSVCALTAMIFSSTVTIAVLVINNWKLNI 934
+ L L+A G I + +LN V +VC TA IFS+ +W +
Sbjct: 90 IGGTVYPGLTLTA--GTIWWLLNSLNIPLSVETVCVFTAPIFSANA--------SWATYL 139
Query: 935 LESVAISTSAGLAVDFSLHYALSYTNAS 962
L A T AGL L SY + S
Sbjct: 140 LTKEAKGTGAGLMAAAILAMVPSYISRS 167
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.138 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,546,441
Number of Sequences: 37544
Number of extensions: 1171520
Number of successful extensions: 3214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3207
Number of HSP's gapped (non-prelim): 17
length of query: 1118
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1028
effective length of database: 11,414,388
effective search space: 11733990864
effective search space used: 11733990864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 65 (30.3 bits)
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