Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000468-TA|BGIBMGA000468-PA|IPR000731|Sterol-sensing 5TM
box
(1118 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.) 215 1e-55
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 128 3e-29
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14) 63 1e-09
SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-05
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 43 0.002
SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.005
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 40 0.008
SB_40314| Best HMM Match : Patched (HMM E-Value=1.3e-08) 38 0.045
SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.060
SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.24
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.74
SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 3.0
SB_52445| Best HMM Match : TatC (HMM E-Value=0.4) 31 3.9
SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08) 31 3.9
SB_17697| Best HMM Match : JmjC (HMM E-Value=2.4e-11) 31 3.9
SB_51270| Best HMM Match : DUF6 (HMM E-Value=6.8) 31 5.2
SB_49091| Best HMM Match : Rhomboid (HMM E-Value=0.54) 31 5.2
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.9
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 30 9.1
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 9.1
>SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 215 bits (526), Expect = 1e-55
Identities = 126/428 (29%), Positives = 219/428 (51%), Gaps = 38/428 (8%)
Query: 609 FHIAFVVVMG-ALGFISLVVVFYSPGLHLPDSKQFQLFQTSHPFEQYEMQYRDKFLFERL 667
+ + V+ +G +GFI V+F SP + LP SK FQ+F +S EQYEM ++ + +
Sbjct: 225 YFLWIVIFIGLTIGFIC--VIFVSPKISLPSSKDFQVFASSSTLEQYEMNVKNNIRYAQ- 281
Query: 668 SKDLGTGTKMPLRWVWGVKAIDNGNHMDPASKGHLVFDENFSISDPKSQSWLLGFCARIK 727
G G + ++ +WGVK DNG+H++P G L ++ NF P+SQ W+L ++
Sbjct: 282 ----GQGWGLWVKLIWGVKPEDNGHHLNPDDLGTLTYENNFDPFAPESQKWMLSLSKNLR 337
Query: 728 GQPFYQQTLGPLLPNCFIESFKMYMSRRCIDNIDKINRSPCCETSKFPYKKEVFDFCIIK 787
Q F+ +T P E F +D + C E FPY + VF+ C K
Sbjct: 338 NQTFFSKTKN-YYPKTPFEMF-----------LDHAIQESCLENYTFPYPRAVFENCYKK 385
Query: 788 AMESLYQTPRELFMPGVAGPKFLRSAKPPIIAALVVEFESIVPYSLSYSEMNKFFTEVEK 847
+ + V + + KP A+ F + Y+ ++ M+ F+ E+
Sbjct: 386 L---------DFYNKYVL---YDENGKP---RAVSWGFATDFSYTSAFKPMDDFWNEINS 430
Query: 848 WTQTELENAPAGMKCGWFLSD-FQFYDLQRTLASGTIVALLLSAALGFIVLIPATLNFVT 906
W+ E+ AP G++ GW + + FY LQ +L++GT ++ +S A+ F+V++ TLN
Sbjct: 431 WSTKEMAKAPKGLQNGWAVCESLDFYSLQASLSAGTFSSMSISVAIAFVVMLLTTLNIFI 490
Query: 907 SVCALTAMIFSSTVTIAVLVINNWKLNILESVAISTSAGLAVDFSLHYALSY--TNASGN 964
S+ A+ ++ +T+ LV+ W+LNILES+ +S + GL++DF++HY ++Y +
Sbjct: 491 SLYAIITIVGILAITVGSLVLLGWQLNILESIVMSVAVGLSIDFTMHYGVAYRLSPYKDR 550
Query: 965 KSARVKYXXXXXXXXXXXXXXXXGFAGVFLLRSNLLPYSQIGAFLVLIMTVSWTYATFFL 1024
+ RV+Y G+ ++ + +L Y+Q+G FL+L+M S+ YAT
Sbjct: 551 RDIRVRYSFVHIGSAIFMAALTTFITGLLMMPAIVLVYNQLGVFLMLVMFFSYIYATLAF 610
Query: 1025 CSLLHIVG 1032
S+ ++G
Sbjct: 611 QSMCALIG 618
Score = 100 bits (239), Expect = 7e-21
Identities = 51/145 (35%), Positives = 86/145 (59%), Gaps = 20/145 (13%)
Query: 423 AITFSLGIAYFFYVYVFNLHFFPFMNLLVIVIVLGIGADDAFIYVKIWKMIGKQLIKDNV 482
+I F+L AYF Y V ++FFPF+N++ +V ++GIGADDAF+Y IW+ K
Sbjct: 19 SIIFALVDAYFIYKIVLGINFFPFLNVVTLVFLVGIGADDAFVYYDIWRQTKK------- 71
Query: 483 VYQENGVLDINISSAGETILVQILEETMRHSIVTIFITTLTTAVAFYASYVSYIPAINCF 542
+ E L + +T+R++ +++ +T++TT+ AF+AS S I +I CF
Sbjct: 72 ------------AHPNEDCLT-LTWKTLRYAALSMLVTSMTTSAAFFASVSSKITSIKCF 118
Query: 543 SVFAGTAVLVNFVLMMTWLPISVFI 567
+FAG ++L +++M+TW P V +
Sbjct: 119 GIFAGISILTCYLMMITWFPAVVLL 143
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 128 bits (308), Expect = 3e-29
Identities = 60/184 (32%), Positives = 101/184 (54%), Gaps = 7/184 (3%)
Query: 606 VTKFHIAFVVVMGALGFISLVVVFYSPGLHLPDSKQFQLFQTSHPFEQYEMQYRDKFLFE 665
V K+ ++ + L + ++V+ PGL P S FQ+F +SHP E YE+ +++KF FE
Sbjct: 517 VIKYRFLWITICSLLTALGMMVLLAHPGLQFPTSADFQMFSSSHPLEAYELNFKNKFRFE 576
Query: 666 RLSKDLGTGTKMPLRWVWGVKAIDNGNHMDPASKGHLVFDENFSISDPKSQSWLLGFCAR 725
+S + T P+ WGV+ D G+ +DP G +D+ F +P SQ W + FC R
Sbjct: 577 -MSPSQESVT-FPIDIFWGVEPEDYGDSLDPYDYGKFGWDKTFDFINPDSQKWFMEFCRR 634
Query: 726 IKGQPFYQQTLGPLLPNCFIESFKMYMSRRCID-NIDKINRSPCCETSKFPYKKEVFDFC 784
+G+ F+ + G CF+E ++ ++ C+D + ++ PCC S FPY +V +FC
Sbjct: 635 FRGEEFFAKKAGS-EKQCFLE---VFYNQSCMDEQVPELCNYPCCRNSSFPYSLDVLNFC 690
Query: 785 IIKA 788
+ +
Sbjct: 691 TLSS 694
Score = 126 bits (303), Expect = 1e-28
Identities = 76/268 (28%), Positives = 138/268 (51%), Gaps = 27/268 (10%)
Query: 307 PKYCTQHNAVYNLLFYLIDSEAFSPLNNAQKFVKNTM------LFLPLPRSDTVLPYYKK 360
P + T V + +L+ S N++ + KN L + + + L YY+
Sbjct: 116 PDFSTPVMPVSKTMQFLLCSTTSRTKNSSGRTCKNISATHKLSLHVGIVENTPKLSYYRS 175
Query: 361 LENSNMSYDNLVIPAIDFG-LKNALFDIWIIEDTWLIALGGIFVFACVWIYTRSLILTLF 419
LE +M + + DF LK ++F+ ++ D ++ + + +W YT S+++T+
Sbjct: 176 LEGKSMEDGPVRLVGTDFYFLKFSMFNTKLLADIIYPSIALMIILIIMWFYTESILITIL 235
Query: 420 LFAAITFSLGIAYFFYVYVFNLHFFPFMNLLVIVIVLGIGADDAFIYVKIWKMIGKQLIK 479
L ++ +L +AYF + + L+FFPF+N+ ++ ++GIGADDAF++ +W +Q +
Sbjct: 236 LAVSVVSALILAYFVNMIILRLNFFPFLNITTLIFLVGIGADDAFVFCDVW----RQSKR 291
Query: 480 DNVVYQENGVLDINISSAGETILVQILEETMRHSIVTIFITTLTTAVAFYASYVSYIPAI 539
D+ G + L + T+RH+ ++F+T+ TTA AF A++ S I I
Sbjct: 292 DH---------------PGAS-LKTVTYTTLRHASTSMFVTSFTTAAAFVANFSSEITTI 335
Query: 540 NCFSVFAGTAVLVNFVLMMTWLPISVFI 567
F ++AG A+L F+LM+TW P I
Sbjct: 336 KLFGLYAGVAILAKFLLMVTWFPAMAVI 363
Score = 66.5 bits (155), Expect = 1e-10
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 903 NFVTSVCALTAMIFSSTVTIAVLVINNWKLNILESVAISTSAGLAVDFSLHYALSYTNA- 961
N + SV A+ ++I + +VTI LV+N WKLNILES+ +S + G+++DFS+H+ +++ A
Sbjct: 726 NVLVSVYAILSIIGTISVTIGALVLNGWKLNILESITMSVAVGVSIDFSMHFGVAFCLAP 785
Query: 962 -SGNKSARVKYXXXXXXXXXXXXXXXXGFAGVFLLRSNLLPYSQI 1005
++ +RV+Y AG+ L Y+ +
Sbjct: 786 DKHDRKSRVRYSMSRMGSAITMAAVTTFIAGMASYAGVLKEYTVV 830
>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
Length = 925
Score = 62.9 bits (146), Expect = 1e-09
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
Query: 389 IIEDTWLIALGGIFVFACVWIYTRSLILTLFLFAAITFSLGIAYFFYVYVFNLHFFPFMN 448
+I D L F+F + T+S+ +T + +I A F Y + + + +
Sbjct: 259 VIYDLLLAGASFTFIFLFMLFQTQSIWITSWAVFSILSCFFGANFVYRMILDCRYIGIFH 318
Query: 449 LLVIVIVLGIGADDAFIYVKIWKMIGKQLIKDNVVYQENGVLDINISSAGETILVQILEE 508
+L + I+LGIGADD F+++ W+ ++ + L L
Sbjct: 319 VLSVFIILGIGADDVFVFLDTWRGSDQRAFPN---------------------LAAKLSF 357
Query: 509 TMRHSIVTIFITTLTTAVAFYASYVSYIPAINCFSVFAGTAVLVNFVLMMTWLPISVFIV 568
R + +FIT++TT VAF S S + ++ F +F+ V VN+ ++T+ P ++
Sbjct: 358 VYRRAASAMFITSVTTMVAFTTSVFSPLLGVSTFGIFSALLVFVNYCSVITFFP--TVVI 415
Query: 569 DVKLYAK 575
+LY K
Sbjct: 416 TYELYWK 422
Score = 34.7 bits (76), Expect = 0.42
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 682 VWGVKAIDNGN-HM-DPASKGHLVFDENFSISDPKSQSWLLGFCARIKGQP 730
+WG++ D + H D KG VFD +F ++ P Q +L FC +K P
Sbjct: 574 IWGLQPQDRRSCHFTDYKCKGKTVFDHSFDMNPPPCQMAMLEFCHELKTLP 624
>SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 48.0 bits (109), Expect = 4e-05
Identities = 35/129 (27%), Positives = 70/129 (54%), Gaps = 26/129 (20%)
Query: 445 PFMNLLVIV--IVLGIGADDAFIYVKIWKMIGKQLIKDNVVYQENGVLDINISSAGETIL 502
PF++L+ ++ ++LGIG DD FI V D + Q+N + +
Sbjct: 313 PFISLVGVLPFLILGIGIDDMFILV------------DELDRQDN-----------KLSV 349
Query: 503 VQILEETMRHSIVTIFITTLTTAVAFYASYVSYIPAINCFSVFAGTAVLVNFVLMMTWLP 562
+ ++ MRHS +T+ +TT+T VAF S + P+I F ++A +V +++++++T+
Sbjct: 350 IDTIKMVMRHSGMTVTMTTVTDLVAFAVSTSTAFPSIRYFCIYAALSVTLSYLMIITYF- 408
Query: 563 ISVFIVDVK 571
+++ DV+
Sbjct: 409 VAIATFDVR 417
Score = 36.3 bits (80), Expect = 0.14
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 852 ELENAPAGMKCGWFLSDFQFYDLQRTLASGTIVALLLSAALGFIVLIPATLNFVTSVCAL 911
+LE +K F F++ + S TI L ++AA ++ P L+ V L
Sbjct: 638 DLEENDKSLKAYPISRFFIFFEQYSLIQSETIRNLAIAAAAVLLITWPFLLSI--RVTLL 695
Query: 912 TAMIFSSTVTIAVLVINNW--KLNILESVAISTSAGLAVDFSLHYALSYTNAS 962
+ FS+ + +++ W LN + + + + G +VD+S H A ++ +S
Sbjct: 696 VFLGFSALIVELFALMSVWDVSLNAISMINLVMAIGFSVDYSAHIAHAFVTSS 748
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 42.7 bits (96), Expect = 0.002
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 516 TIFITTLTTAVAFYASYVSYIPAINCFSVFAGTAVLVNFVLMMTWLPISVFIVDVK 571
++ +++L+ +VAF +S +PA+ FS++A AV V+F+L +TW +++ +D K
Sbjct: 930 SMLLSSLSESVAFGFGAMSDMPAVKVFSLYASFAVAVDFILQITWF-VALMSLDAK 984
Score = 33.5 bits (73), Expect = 0.97
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 4/130 (3%)
Query: 869 FQFYDLQRTLASGTIVALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVTIAVLVIN 928
+ FY+ T A+ LL A F+V + F S+ + + +T + ++
Sbjct: 1248 YVFYEQYLTAATNAWKNLLYCIAAVFVVTF-LLMGFNLSIALIVTFTVAMIITNLLGLMY 1306
Query: 929 NWK--LNILESVAISTSAGLAVDFSLHYALSY-TNASGNKSARVKYXXXXXXXXXXXXXX 985
W LN + V + + G++V+F H A ++ N K R +
Sbjct: 1307 LWSISLNAISIVNLVMAVGISVEFCSHIARAFAVNTRNTKRERAEEALIEMGSSVLSGIT 1366
Query: 986 XXGFAGVFLL 995
F G+ +L
Sbjct: 1367 LTKFGGIIVL 1376
>SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 41.1 bits (92), Expect = 0.005
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 502 LVQILEETMRHSIVTIFITTLTTAVAFYASYVSYIPAINCFSVFAGTAVLVNFVLMMTWL 561
++ ++ M +S T+ +TTLT VAF S S +PAI F +A ++ +++++T+
Sbjct: 457 VIDTVKVVMANSGATVTMTTLTDLVAFAVSTTSELPAIRYFCAYAALSITFAYLMIVTFF 516
Query: 562 PISVFIVDVK 571
+++ DV+
Sbjct: 517 -VALMAFDVR 525
Score = 31.5 bits (68), Expect = 3.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 701 HLVFDENFSISDPKSQSWLLGFCARIKGQPFYQQT 735
H++ DE S+ K QS +L A + PFYQ T
Sbjct: 630 HIITDEKVDYSNRKVQSGILDLSAIVTENPFYQNT 664
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 40.3 bits (90), Expect = 0.008
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 502 LVQILEETMRHSIVTIFITTLTTAVAFYASYVSYIPAINCFSVFAGTAVLVNFVLMMTWL 561
+V ++ M +S +T+ +TT+T VAF S + P+I F ++A AV ++++ +T L
Sbjct: 215 VVDTIKTVMANSGMTVTMTTVTDLVAFAVSTSTAFPSIRYFCIYASLAVTFSYIMTIT-L 273
Query: 562 PISVFIVDVK 571
+++ DV+
Sbjct: 274 FVAMATFDVR 283
Score = 36.7 bits (81), Expect = 0.10
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 836 SEMNKFFTEVEKWT-QTELENAPAGMKCGWFLSDFQFYDLQRTLASGTIVALLLSAALGF 894
S N F T + +L++ AG+ F F++ + S TI L++++
Sbjct: 487 SSSNSIFQRDAMLTLRKDLDDYDAGLHSYPVSRFFIFFEQYAIIQSETIRNLVIASVT-- 544
Query: 895 IVLIPATLNFVTSVCALTAMIFSSTVT--IAVLVINNWKLNILESVAISTSAGLAVDFSL 952
++LI + SV L + FS+ + A++ + N LN + + + + G +VD+S
Sbjct: 545 VLLITWSFLLSISVTILVFLGFSALIVELFALMAVWNVTLNTISMINLVMAIGFSVDYSA 604
Query: 953 HYALSYTNAS 962
H A ++ +S
Sbjct: 605 HIAHAFVTSS 614
>SB_40314| Best HMM Match : Patched (HMM E-Value=1.3e-08)
Length = 667
Score = 37.9 bits (84), Expect = 0.045
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 502 LVQILEETMRHSIVTIFITTLTTAVAFYASYVSYIPAINCFSVFAGTAVLVNFVLMMTWL 561
+++ + M +S +T+ +TT+T +AF S + P I F ++A V ++++ +T+
Sbjct: 215 VIETIRLVMANSGMTVTMTTVTDLIAFVVSATTAFPCIRYFCIYASFTVTFSYIMTITFF 274
Query: 562 PISVFIVDVK 571
+++ DV+
Sbjct: 275 -VAMASFDVR 283
Score = 36.3 bits (80), Expect = 0.14
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 878 LASGTIVALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVT--IAVLVINNWKLNIL 935
+ S TI L+++A ++ P L+F SV L + FS+ + A++ + N LN +
Sbjct: 560 IQSETIRNLVIAAVAVLLITWPFLLSF--SVTILVFLGFSALIVELFALMAVWNVSLNTI 617
Query: 936 ESVAISTSAGLAVDFSLHYALSYTNAS 962
+ + + G +VD+S H A ++ ++
Sbjct: 618 SMINLVMAIGFSVDYSAHIAHAFVTST 644
>SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1123
Score = 37.5 bits (83), Expect = 0.060
Identities = 16/79 (20%), Positives = 39/79 (49%)
Query: 880 SGTIVALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVTIAVLVINNWKLNILESVA 939
+G I ++ S L + ++ T + + S+ + ++ + + V + W L +E+++
Sbjct: 910 NGAIYGIVFSLILCMVAVVIFTGHILLSIIVMLTILGVLCLVVGVFYLVGWHLGAVEAIS 969
Query: 940 ISTSAGLAVDFSLHYALSY 958
+S G +VD+ +H Y
Sbjct: 970 LSILVGTSVDYCVHLIDGY 988
>SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 35.5 bits (78), Expect = 0.24
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 515 VTIFITTLTTAVAFYASYVSYIPAINCFSVFAGTAVLVNFVLMMTWLPISVFIVDVK 571
V++ +T+ VAF + + IPA+ FS+ A V+ N++ + P ++ +DVK
Sbjct: 42 VSVLLTSFNNMVAFLMAAIIPIPALRAFSIQAAVIVVFNYLAVTIVFP-AMIAIDVK 97
>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 33.9 bits (74), Expect = 0.74
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 839 NKFFTEVEKWTQTELENAPAGMKCGWFLSDFQFYDLQRTLASGTIVALLLSAALGFIV 896
+ F+ E+ W EL ++ +G WF +F + + RT G++V+ +L + + ++
Sbjct: 315 SSFYGELSSWFYGELSSSLSGELSSWFYGEFSSWLVWRTWFLGSMVSSVLGSMVSLVL 372
>SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 31.9 bits (69), Expect = 3.0
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 884 VALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVTIAVLVINNWKLNILESVAISTS 943
+AL L A FIV I N T++ T + F+ + ++ + ++ + +
Sbjct: 396 IALALLAV--FIVTIVVIANLWTALMVFTCVAFTLVDLCGFMYFWGLTIDTITTIQLVLA 453
Query: 944 AGLAVDFSLHYALSYTNASGNKSARVK 970
GLAVD+S H + G R +
Sbjct: 454 VGLAVDYSSHIGHMFMITPGTHEDRAR 480
>SB_52445| Best HMM Match : TatC (HMM E-Value=0.4)
Length = 258
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/91 (20%), Positives = 42/91 (46%)
Query: 877 TLASGTIVALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVTIAVLVINNWKLNILE 936
TL + + L+ A+ ++ I T+ ++ A+ + T+ IA+ + + I+
Sbjct: 63 TLQQAIAITIKLAIAITIMLAIAITIILAIAITITLAIAITITLAIAITIKLAIAITIML 122
Query: 937 SVAISTSAGLAVDFSLHYALSYTNASGNKSA 967
++AI+ +A+ L A++ A N A
Sbjct: 123 AIAITIMLAIAITIILAIAITLKQAMINTDA 153
Score = 30.7 bits (66), Expect = 6.9
Identities = 17/85 (20%), Positives = 41/85 (48%)
Query: 877 TLASGTIVALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVTIAVLVINNWKLNILE 936
T+ + ++L+ AL + I T+ ++ + A+ + IA+ + + I+
Sbjct: 23 TIILAIAITIMLAIALTITLAIALTIKLAIAITIMLAIAITLQQAIAITIKLAIAITIML 82
Query: 937 SVAISTSAGLAVDFSLHYALSYTNA 961
++AI+ +A+ +L A++ T A
Sbjct: 83 AIAITIILAIAITITLAIAITITLA 107
>SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
Length = 364
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 872 YDLQRTLASGTIVALLLSAALGFIVLIPATLNFVTSVCA--LTAMIFSSTVT 921
Y + RT +G +V+L LS L VL+P +N TS+ L ++I + VT
Sbjct: 34 YRILRTFTNGFVVSLALSDILFGAVLLPVNINDQTSIYVGYLMSIILMANVT 85
>SB_17697| Best HMM Match : JmjC (HMM E-Value=2.4e-11)
Length = 1054
Score = 31.5 bits (68), Expect = 3.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1046 PVSRVNSVSSGVPNLESHELEHLADSNRTNVTHSQSPS-SVSATTVVLHDDYKTPH 1100
PV +++ VP E+ A+S RT TH S S + V+ D+Y PH
Sbjct: 434 PVEAPTTIAPLVPREPLPEVATSAESTRTETTHMDETSRSAFSDEPVITDEYPAPH 489
>SB_51270| Best HMM Match : DUF6 (HMM E-Value=6.8)
Length = 301
Score = 31.1 bits (67), Expect = 5.2
Identities = 11/66 (16%), Positives = 36/66 (54%)
Query: 883 IVALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVTIAVLVINNWKLNILESVAIST 942
++A+ ++ A+ +++I + T+ A+ + + IA++++ + I ++AI+
Sbjct: 95 VIAIAIAIAIAIVIVIVIVIVIATATAIAIAIAIAIAIAIAIVIVIGIAIAIAIAIAIAI 154
Query: 943 SAGLAV 948
+ +A+
Sbjct: 155 AIAIAI 160
>SB_49091| Best HMM Match : Rhomboid (HMM E-Value=0.54)
Length = 353
Score = 31.1 bits (67), Expect = 5.2
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 878 LASGTIVALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVTIAVLVINNWKLNILES 937
+ + TIV L L+ L ++ + L +++ + + + ++ + ++I+
Sbjct: 221 MRTDTIVTLSLTIILLLVLTYYYFRRKRIPLLLLVPVLYGAVMGLGIVYLLQGHISIIAL 280
Query: 938 VAISTSAGLAVDFSLHYALSYTNASGNKSARVK 970
A + G+A+DFS+H+ LS+ S + A VK
Sbjct: 281 GAGAIIMGIAIDFSIHF-LSHAKQSKDLRATVK 312
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 30.7 bits (66), Expect = 6.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 846 EKWTQTELENAPAGMKCGWF---LSDFQFYDLQRTLASGTIVALLLSAALGFIVLIPATL 902
E+W + N+P G+ CG F S + + R +AS V++ L L F +L
Sbjct: 2369 EQWCHNHVINSPVGLACGGFGAGSSAYYYRACLRVIASYQSVSIGLETVLSFSDTCQVSL 2428
Query: 903 N 903
N
Sbjct: 2429 N 2429
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 30.3 bits (65), Expect = 9.1
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 557 MMTWLPISVFIVDVKLYAKK-KTFLDLVHKN 586
M+TW P+++++V + LYA K F +++H N
Sbjct: 1 MVTWYPLALWLVSLVLYAHAGKPFTEVLHYN 31
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 30.3 bits (65), Expect = 9.1
Identities = 18/81 (22%), Positives = 40/81 (49%)
Query: 877 TLASGTIVALLLSAALGFIVLIPATLNFVTSVCALTAMIFSSTVTIAVLVINNWKLNILE 936
++A VA+ ++ A+ V + + +V A A+ + V +AV V + +
Sbjct: 231 SVAVAVAVAVAVAVAVAVAVAVAVAIAVAVAVAAAVAVAVAIAVAVAVAVAVAVAVAVAV 290
Query: 937 SVAISTSAGLAVDFSLHYALS 957
+VAI+ + +AV ++ A++
Sbjct: 291 AVAIAVAVAVAVAVAIAIAIA 311
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.138 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,531,465
Number of Sequences: 59808
Number of extensions: 1395210
Number of successful extensions: 4426
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4282
Number of HSP's gapped (non-prelim): 137
length of query: 1118
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1028
effective length of database: 11,438,737
effective search space: 11759021636
effective search space used: 11759021636
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 65 (30.3 bits)
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