GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000468-TA|BGIBMGA000468-PA|IPR000731|Sterol-sensing 5TM
box
         (1118 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    31   0.13 
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    26   4.8  

>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
            subunit AgBnu protein.
          Length = 803

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 1042 RERKPVSRVNSVSSGVP---NLESHELEHLADSNRTNVTHSQSPSSVSATTVVLHDDYKT 1098
            RE +P++R +++  G     N+E H LE+  D + TNVT       +S   V L  D +T
Sbjct: 405  REPQPINRCDNIEIGKEYKFNVEIHLLEYPKDPSITNVTVRIEEKLISNEAVELDIDLRT 464


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 256 PNYIALISGKDSCVNLNKEDVKKAVTILKKCAGYFHNFTLMAACDLDHC 304
           P+ I  + GK +C+  NK+D + A+   KK      N        + HC
Sbjct: 159 PSNIPSLLGK-ACIAFNKKDYRGALAFYKKALRTNPNCPAAVRLGMGHC 206


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.324    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,081,765
Number of Sequences: 2123
Number of extensions: 43959
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 2
length of query: 1118
length of database: 516,269
effective HSP length: 71
effective length of query: 1047
effective length of database: 365,536
effective search space: 382716192
effective search space used: 382716192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)