GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000468-TA|BGIBMGA000468-PA|IPR000731|Sterol-sensing 5TM
box
         (1118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    28   0.37 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   6.0  

>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled receptor
            protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 15/103 (14%)

Query: 996  RSNLLPYSQIGAFLVLIMTVSWTYATFFLCSLLHIVGRSSIKESPSRERKPVSRVNSVSS 1055
            R   + YS +G+F + ++ +S  Y   +L +   +           RER   SR+N+V S
Sbjct: 193  RQGYVIYSSLGSFFIPLLLMSLVYLEIYLATRRRL-----------RERARQSRINAVQS 241

Query: 1056 GVPNLESHELEHLADSNRTNVTHSQSPSSVSATTVVLHDDYKT 1098
               + E+ + E  + S+ TN     +P S +  +++  DD  T
Sbjct: 242  -TRHREADDAEE-SVSSETNHNERSTPRSHAKPSLI--DDEPT 280


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 443  FFPFMNLLVIVIVLGIGADDAFIYVKIWKMIGKQLIKDNVVYQENGV 489
            F   +NL+V V+   +    A I + + +  G    KD+VVYQ+ GV
Sbjct: 1581 FMANLNLVVPVVAAILVIIVAVIVICVLRGKGHGSDKDDVVYQQTGV 1627


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/33 (33%), Positives = 12/33 (36%)

Query: 286 CAGYFHNFTLMAACDLDHCNVPKYCTQHNAVYN 318
           C    H F L   CD D C+    C      YN
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAGCKCYN 769


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 306,177
Number of Sequences: 429
Number of extensions: 13025
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 5
length of query: 1118
length of database: 140,377
effective HSP length: 65
effective length of query: 1053
effective length of database: 112,492
effective search space: 118454076
effective search space used: 118454076
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)