Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000467-TA|BGIBMGA000467-PA|IPR002126|Cadherin,
IPR006209|EGF-like, IPR012680|Laminin G, subdomain 2,
IPR002049|EGF-like, laminin, IPR001879|Hormone receptor,
extracellular, IPR000203|GPS, IPR000152|Aspartic acid and asparagine
hydroxylation site, IPR013032|EGF-like region,
IPR000005|Helix-turn-helix, AraC type, IPR000083|Fibronectin, type I,
IPR006210|EGF, IPR001791|Laminin G, IPR001881|EGF-like
calcium-binding, IPR000742|EGF-like, type 3
(2796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 37 0.047
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 34 0.33
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 32 1.3
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 31 1.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 31 3.1
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 5.3
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 29 7.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 29 7.1
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 29 7.1
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 36.7 bits (81), Expect = 0.047
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 1497 LLNRPTVRENVRDG--CQSRADCML----SICPPYSKCVTSWDSSTCTCEAGRVGPQCVS 1550
L N+P RENVR G C C +C P +C S+C E G+ C
Sbjct: 686 LENQPCYRENVRCGELCNKLLSCKTHFCEKLCHPDGEC-----ESSCKKECGKRRMYCEH 740
Query: 1551 ACELGPCGAAR-C---VPDQTPKGYSCAC 1575
C+ PC A C +P + P SC C
Sbjct: 741 VCQ-SPCHAGHPCDERIPCKAPLEVSCEC 768
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 33.9 bits (74), Expect = 0.33
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 139 NIIDDNDNYPQFSEKTYTVSVDEDISVTDNPVIAKIKATDADVGANSAIRYAIIGGNTQM 198
NII +ND + + +E + D ++ K + ++ + + + +T+
Sbjct: 122 NIISNNDKILPMTTMASATASEEKNRIKDEALVIKKEESNVAIPSEVTVAANAFSASTED 181
Query: 199 QFSI--DSLSGDVSLVKTLDYEQVRSYRLVIRAQDGGSPSRSNTTQLLINIRDVNDNAPR 256
+SI DSLS S+ D + + + A +G S RS + ++ V +
Sbjct: 182 VYSIVGDSLSKKASVKDFSDVTGIETIPAYVEATNGSSTVRSPHAKRSLSSISVKSSTSP 241
Query: 257 FYTSLFQESVS 267
F S F S S
Sbjct: 242 FSGSKFLSSSS 252
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 31.9 bits (69), Expect = 1.3
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 10/161 (6%)
Query: 1866 DEYIAVLA-ESQHDTYTSPFEIVTKDVVISVDTVTSESIYGFEPTQLNRLNVDSYTTERV 1924
D +A+L+ S H ++ P ++ + S T + F N+++ +Y T R+
Sbjct: 123 DSLLALLSFSSNHRLHSMPSQLQPFNNASSYTTPMAPFTASFS----NKVSHSAYPTRRL 178
Query: 1925 VA-LPDTSAFIHSPIQAXXXXXXXXXXXXX-XXXXXXVSFPKYNNYVRSKNKFDKYTRVL 1982
+ TSA P+ FPK + SK + +L
Sbjct: 179 PSQAKKTSAIERVPVNLNFLQSDNLVVQSSPQTNFENFEFPKK---IPSKEDLETREVLL 235
Query: 1983 LPLDLLGISNNNLQDITDTNYETRAVFGYVQYSRNSSQLMP 2023
LP +SN NL + T+ + G+V+ S NSS++ P
Sbjct: 236 LPPQTSKLSNKNLDTKSFTDVNKISQQGFVEISSNSSKVTP 276
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 107 REKVARYTVLVKATDQASPVSDRLSSTATIHVNIIDDNDNYPQFSEKTYTVSVDEDISVT 166
+E ARY L+ + +Q S + VNII ++ +Y FS + VD +SVT
Sbjct: 17 KENKARYAKLLNSFEQKYHCKPDFFSRSPGRVNIIGEHIDYNYFSVLPMAIDVDVIVSVT 76
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 30.7 bits (66), Expect = 3.1
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 2586 PEMGRWSQETGSDNEGANMGIATPSPNPLPNPDLTSDVYLNRHRLKPSILENVHDTYVAS 2645
P++ R T S + G + +PS P+ + DVY + L+ S N + + +
Sbjct: 331 PKLTRTPSLTKSLDPGTPTSLKSPSLRKSPSSFVQKDVYSRSNSLRIS-QANRSNVFPGA 389
Query: 2646 VDASRLPLDNRYGVMEDELMYGVL--PIDREKQMPYDPNYPISPTMYRLPGN-----PYG 2698
D +R D+R + + G + P+ + + PN P+S T+ LP + P G
Sbjct: 390 TDVTRSVSDHRI-LSSSTINDGEVAPPLPQRSRTISSPNSPLSATV--LPSSTPILLPRG 446
Query: 2699 SKTYLSSRTSDYGYSPTKYMNDTN 2722
+ LS + +N N
Sbjct: 447 RSSTLSVNKKQFNADDGSTLNSPN 470
>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 451 DTAMVQINITDANNYAPVFENAPYTASVFEDAPIGTTVLVVSATDSDVGINAQITYSLSS 510
D M+ I++ + P + A++FE + + + D I Q+TY L
Sbjct: 27 DVTMINISLYKSYKSYPTNKVLSELAALFESCNL---IFDLIWFDDLQNILNQVTYELDD 83
Query: 511 EISNEAVAHHDQQFVINPQTGAITTNKLLDRET 543
+I ++ H+++ V + Q+ +N D++T
Sbjct: 84 KIKSKLQVAHEREAVFSKQSDRKISNNKADKKT 116
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 29.5 bits (63), Expect = 7.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 1790 PRL-YGADVVVAEGILLELMDYELRQAGLNLTHSQDKDYVRNLLKSTNTILNV 1841
PRL GA + E + EL +LR H DY +N+L + L +
Sbjct: 239 PRLGQGAFAICCESVFKELTGKDLRNTKYGKPHKLTYDYAKNILMKKHKTLGI 291
>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 29.5 bits (63), Expect = 7.1
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 2594 ETGSDNEGANMGIATPSPNPLPNPDLTSDVYLNRHRLKPSILENVHDTYVASVDASRLPL 2653
ET S+N + T P P P+P + N+ +++ S+L V V+ VDA L +
Sbjct: 752 ETVSENSKWMPEMPTRMPPPGPSPTMFGRSLENQLKIEGSVLPQVIAMCVSCVDAHGLEV 811
Query: 2654 DNRYGV 2659
+ Y +
Sbjct: 812 EGIYRI 817
>SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 29.5 bits (63), Expect = 7.1
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 2069 IEHNAEETEGILYANRGTKHYQANRVSSQRQNRPHTKEDPPAEHGPVLIQPAFKKHERND 2128
++ EE EG ++ +G + + R S ++ P T + PV P K RN
Sbjct: 1 MKRKPEEQEGFVFVRKGKEKAGSKRRKSSVEDDPDTSQTDGLVELPVSDTPIVK---RNK 57
Query: 2129 QIQENESLFVADRDDGPKVMALVMDGETRSNATGVGKKMYRSLSGIRLKKPIRLQ 2183
++++ + + G + ++ E +A + YR +S L +P+R++
Sbjct: 58 ELRKGKGRRSSLDQRGKRASSIGTGFEALPHADVPSHEYYRHISK-DLSEPLRIK 111
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,613,451
Number of Sequences: 5004
Number of extensions: 551488
Number of successful extensions: 1318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 12
length of query: 2796
length of database: 2,362,478
effective HSP length: 86
effective length of query: 2710
effective length of database: 1,932,134
effective search space: 5236083140
effective search space used: 5236083140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -