Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000467-TA|BGIBMGA000467-PA|IPR002126|Cadherin,
IPR006209|EGF-like, IPR012680|Laminin G, subdomain 2,
IPR002049|EGF-like, laminin, IPR001879|Hormone receptor,
extracellular, IPR000203|GPS, IPR000152|Aspartic acid and asparagine
hydroxylation site, IPR013032|EGF-like region,
IPR000005|Helix-turn-helix, AraC type, IPR000083|Fibronectin, type I,
IPR006210|EGF, IPR001791|Laminin G, IPR001881|EGF-like
calcium-binding, IPR000742|EGF-like, type 3
(2796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0413 + 22681957-22682035,22682253-22682788 38 0.088
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205... 35 0.82
08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671... 35 0.82
11_08_0003 + 27492503-27492812,27492863-27493148,27495399-274956... 34 1.4
05_01_0078 - 523366-525196,525622-525675,527135-529341 34 1.4
07_03_0179 + 14801037-14801108,14801325-14802788 33 2.5
04_04_0121 - 22914403-22914550,22915120-22915196,22915288-229153... 33 2.5
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364... 33 3.3
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 33 3.3
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268 33 3.3
04_01_0377 - 4970034-4970687 33 3.3
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 33 3.3
03_01_0427 + 3296717-3296861,3296966-3297210 33 3.3
07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934 32 5.8
07_01_0376 + 2815419-2815755,2815912-2817659 32 7.7
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 38.3 bits (85), Expect = 0.088
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 1564 PDQTPKGYSCACEPGYTLTTSGCIESGKEECPGGWWGGSACGPC-ACDVTRGYHPHCNKE 1622
P P S P + +GC +G C GG GG C P +C+ +HP C
Sbjct: 92 PPHPPPSPSPCVHPPCCESAAGCCCNG---CSGGGCGGGQCPPSPSCE---NHHPPCKPG 145
Query: 1623 NGKCHCKENHYKPEGTAECL-------PCQCYAAGSENSSCEAATGQCHCRPGVIGRA 1673
C C P + C PC+ + SE+ C+ C R G G++
Sbjct: 146 CCCCGCSGGECPPPPSPPCQHECPPTPPCE-HPPCSESGCCDKGCNSCCNRCGEYGQS 202
Score = 31.9 bits (69), Expect = 7.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 1548 CVSACELGPCGAARCVPDQTPKGYSCACEPGYTLTTSGCIESGKEECP 1595
C + C G CG +C P + + + C+PG GC SG ECP
Sbjct: 115 CCNGCSGGGCGGGQCPPSPSCENHHPPCKPG--CCCCGC--SG-GECP 157
>11_08_0004 + 27518384-27519018,27519147-27519397,27520437-27520559,
27523499-27524529
Length = 679
Score = 35.1 bits (77), Expect = 0.82
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 1310 CPEKRSRCSSAPCYNGAECSDLWDTYICDCKEGHTGKDCADSTG 1353
C +R + PCY G+ C D Y C C+ H G A + G
Sbjct: 300 CELRREEPTKYPCYGGSRCYDTEGGYKCKCRFPHRGDATAVAGG 343
>08_02_1157 + 24765719-24766544,24766569-24766637,24767031-24767180,
24767296-24768503
Length = 750
Score = 35.1 bits (77), Expect = 0.82
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1484 GCIQDVRIGTAQSLLNRPTVRENVRDGCQSRADCMLSICPP-YSKCVTSWDSSTCTCEAG 1542
GC+ D R G A + + +GCQ +CML P + KC+ + S C C G
Sbjct: 270 GCLSDNRRGYACKCRSGYDGNPYMPNGCQDINECMLPNPPLCFGKCINTVGSYECICPGG 329
Query: 1543 RVG 1545
G
Sbjct: 330 TSG 332
>11_08_0003 + 27492503-27492812,27492863-27493148,27495399-27495652,
27496645-27496830,27497042-27498117
Length = 703
Score = 34.3 bits (75), Expect = 1.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 1296 DLNSYVADNGTLAGCPEKRSRCSSA------PCYNGAECSDLWDTYICDCKEGH----TG 1345
D N Y+ NG E R S+ PCYNG+ C + Y C C+ H TG
Sbjct: 271 DGNPYLKGNGGCIDIDECHLRTKSSIYGQLYPCYNGSRCQNTDGGYKCICRFPHRGDGTG 330
Query: 1346 KDC 1348
K C
Sbjct: 331 KGC 333
>05_01_0078 - 523366-525196,525622-525675,527135-529341
Length = 1363
Score = 34.3 bits (75), Expect = 1.4
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 2651 LPLDNRYGVMEDELMYGVLPIDREKQMPYDPNYPISPTMYRLPGNPYGSKTYLSSRTSDY 2710
LP DN+Y E E + ++Q+ P P ++ P GS+TYLS +
Sbjct: 5 LPFDNQYTTTETEQPHDGSSCSSQQQLSLYNYSPSDPQLFSQPTT--GSRTYLSGAVTIP 62
Query: 2711 GYSPTKYMNDTNVYGSRDFR-DSGVSTRDHDGYPPRDFRDS--GIATMLKNDYQRKMDGH 2767
G ND + G + F+ D+ +S GY D+ I+ +L D ++D H
Sbjct: 63 G-----ICNDKSNLGQQQFQIDAALSL----GYQRIRSSDALCYISRVLMEDVDERVDLH 113
Query: 2768 YGE 2770
GE
Sbjct: 114 QGE 116
>07_03_0179 + 14801037-14801108,14801325-14802788
Length = 511
Score = 33.5 bits (73), Expect = 2.5
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 670 TVIVHIKIEDINDSPPVFESDCLTFYISENSPIGTTIGEIRAHDPDEGPNAVVHYSIKGG 729
T I+++KI I S PVF+S T ++E PI I E+ A P E P ++ SI
Sbjct: 317 TGILNLKIGRIATSVPVFQS---TNSLTEPLPIPEPIEEVMAVSPFETPESIFDESI--- 370
Query: 730 DDSNSFSLETRQGSDKAELVTMVDLDYESPRKKYELVIRAASPPLWNDVRVEILVTD 786
++ N ETR D + DL +P + L L DV ++++D
Sbjct: 371 EEFNEGEDETRATMD----LLKTDLPSRAPIELKPLPSGLRYAFLNGDVESPVIISD 423
>04_04_0121 -
22914403-22914550,22915120-22915196,22915288-22915335,
22915995-22916081,22916233-22916370,22916502-22916537,
22916667-22916741
Length = 202
Score = 33.5 bits (73), Expect = 2.5
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 8 HQQINVLDCNDHSPVFEMQQYEASVREGASSGTTVLTLKATDQDIGKNAEVEY--TIEL 64
HQ++ V D S +FE+ + V +G S+ L A +QD G N VE+ TIEL
Sbjct: 36 HQEVFVDPARDESLIFELLDLKGEVEDGGSA-LWFLRDIANEQDAGDNLVVEHSGTIEL 93
>11_08_0022 + 27733247-27733935,27735722-27735981,27736213-27736404,
27737695-27738686
Length = 710
Score = 33.1 bits (72), Expect = 3.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 1321 PCYNGAECSDLWDTYICDCKEGHTGKDCADSTGPP 1355
PCY G++C D Y C C+ G G D+ P
Sbjct: 336 PCYGGSKCHDTEGDYRCKCRLGRRGDGKIDNGCQP 370
>11_08_0007 + 27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 33.1 bits (72), Expect = 3.3
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 1310 CPEKRSRCSSAPCYNGAECSDLWDTYICDCKEGHTGKDCADSTGPP 1355
C +R + PCY+G+ C D Y C C+ H G D P
Sbjct: 294 CELRREGPAMYPCYSGSRCYDTEGGYKCKCRFLHRGDGKIDKGCKP 339
Score = 32.3 bits (70), Expect = 5.8
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 1538 TCEAGRVGPQCVSACELGPCGAARCVPDQTPKGYSCACEPGYT---LTTSGCIESGKEEC 1594
+C + P CVSA + CV KGY C C GY+ T GCI + E
Sbjct: 244 SCSSATGAPACVSA-------HSYCVNATNGKGYLCNCSAGYSGNPYVTGGCININECEL 296
Query: 1595 PGGWWGGSACGPCACDVTRGYHPHCNKENG-KCHCKENH 1632
G A PC +R Y + E G KC C+ H
Sbjct: 297 RR---EGPAMYPCYSG-SRCY----DTEGGYKCKCRFLH 327
>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
Length = 667
Score = 33.1 bits (72), Expect = 3.3
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 1509 DGCQSRADCMLSI-CPPYSKCVTSWDSSTCTCEAGRVGPQCVSAC 1552
DGCQ +C S P Y KC+ C C AG G V C
Sbjct: 201 DGCQDINECEDSNKYPCYGKCINKLGGFDCFCPAGTRGDASVGPC 245
>04_01_0377 - 4970034-4970687
Length = 217
Score = 33.1 bits (72), Expect = 3.3
Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 1504 RENVRDGCQSRADCMLSICPPYSKCVTSWDSSTCTCEAGRVG---PQCVSACELGPCGA- 1559
R+ GCQS A C C T ++ C+ + G G C S C+ GPC A
Sbjct: 46 RDYCGTGCQSGACCSSQRCGSQGGGATCSNNQCCS-QYGYCGFGSEYCGSGCQNGPCRAD 104
Query: 1560 ARCVPDQTPKGYSCACEPGYTLTTSGCIESGKEECPGGWWGGSACGPCACDVTRG 1614
+C + + C + G G E C G G+ C C G
Sbjct: 105 IKCGRNANGE----LCPNNMCCSQWGYCGLGSEFCGNGCQSGACCPEKRCGKQAG 155
>03_02_0932 + 12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 33.1 bits (72), Expect = 3.3
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 1966 NNYVRSKNKFDKYTRVLLPLDLLGISNNNLQDITDTNYETRAVFGYVQYSRNSSQL---M 2022
+N ++ FD + L P+D S L+ I D+ ET + Y+ S L +
Sbjct: 1057 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETHPELPLILYASGSGGLLERL 1116
Query: 2023 PLRMDDSVSLRWGVNITIG 2041
PL D VSL W V++ G
Sbjct: 1117 PLTGVDVVSLDWTVDMAEG 1135
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 33.1 bits (72), Expect = 3.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 1544 VGPQCVSACELGPCGAARCVPDQTPKGYSCACEPGY 1579
+ P S C+ CG C GY C CEPG+
Sbjct: 44 LAPVIGSMCKTVACGKGNCTAASGFPGYRCECEPGW 79
>07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934
Length = 363
Score = 32.3 bits (70), Expect = 5.8
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 2047 IAVFVPESI-WTRETGEGSEDNSIEHNAEETEGILYANRGTKHYQANRVSSQRQNRPHTK 2105
IA VP I + G+ E S E NA+ + + +GTK + +S RQ K
Sbjct: 229 IAEMVPHEIPGLEKRGKRREKQSAEANAKAKQPGVVVVQGTKPGKPTDLSRMRQVLMKLK 288
Query: 2106 EDPPAEHGPVLIQPA 2120
+ PP P QPA
Sbjct: 289 QTPPPHMAPPPPQPA 303
>07_01_0376 + 2815419-2815755,2815912-2817659
Length = 694
Score = 31.9 bits (69), Expect = 7.7
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 155 YTVSVDEDISVTDNPVIAKIKATDADVGANSAIRYAIIGGNTQMQFSIDSLSGDVSL-VK 213
Y +S + ++SV PV KI A + + G + Y I + I +S +
Sbjct: 74 YRISREVELSVLTKPVELKIVAKEFENGLKYS-GYKYIHQAPDLMMPIKEFIDKMSFGFQ 132
Query: 214 TLDYEQVRSYRLVIRAQDGGSPSRSNTTQLLINIRDVNDN 253
T YE+ + L++ + G + + ++ IN+ DV +N
Sbjct: 133 TKGYEEFKGTNLLVSIEFIGRLTNRSASKYKINVNDVIEN 172
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,151,163
Number of Sequences: 37544
Number of extensions: 3740021
Number of successful extensions: 8645
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8632
Number of HSP's gapped (non-prelim): 27
length of query: 2796
length of database: 14,793,348
effective HSP length: 95
effective length of query: 2701
effective length of database: 11,226,668
effective search space: 30323230268
effective search space used: 30323230268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 69 (31.9 bits)
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