GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000467-TA|BGIBMGA000467-PA|IPR002126|Cadherin,
IPR006209|EGF-like, IPR012680|Laminin G, subdomain 2,
IPR002049|EGF-like, laminin, IPR001879|Hormone receptor,
extracellular, IPR000203|GPS, IPR000152|Aspartic acid and asparagine
hydroxylation site, IPR013032|EGF-like region,
IPR000005|Helix-turn-helix, AraC type, IPR000083|Fibronectin, type I,
IPR006210|EGF, IPR001791|Laminin G, IPR001881|EGF-like
calcium-binding, IPR000742|EGF-like, type 3
         (2796 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    32   0.058
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    31   0.13 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   6.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   6.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   6.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   8.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
            protein.
          Length = 430

 Score = 32.3 bits (70), Expect = 0.058
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 2591 WSQETGSDNEGANMGIATPSPNPLPNPDLTSDVYLNRHRLKPSILENVHDTYVAS--VDA 2648
            W  +TG+   G N  I    P  L   DLTSD  L ++RL+   +    +T++A+  VD 
Sbjct: 142  WVLDTGTIGIG-NTTIQA-CPYTLNIFDLTSDKLLRQYRLRAEDINM--NTFIANIAVDL 197

Query: 2649 SRLPLDNRYGVMEDELMYGVL 2669
             +   ++ +  M DEL YG++
Sbjct: 198  GKGGCNDAFAYMSDELGYGLI 218


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 1568 PKGYSCACEPGYTLTTSGCIESGKEECPGGWWGGSACGPCACDVTRGYHPHCNKENGKCH 1627
            P G  C C+PGY        +    ECP G +   A G  +C+    +    +    +C 
Sbjct: 243  PSG-GCHCKPGYQADVE---KQECTECPIGKFKHEA-GSHSCEACPAHSKSSDYGFTECR 297

Query: 1628 CKENHYKPEGTAECLPC 1644
            C   +++ E   + +PC
Sbjct: 298  CDPGYFRAEKDPKKMPC 314



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 12/58 (20%)

Query: 1623 NGKCHCKENHYKPEGTAECLPC------------QCYAAGSENSSCEAATGQCHCRPG 1668
            +G CHCK  +       EC  C             C A  + + S +    +C C PG
Sbjct: 244  SGGCHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPG 301


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 1330 DLWDTYICDCKEGHTGKDCADSTGPPWRFGGDGMLSFNPLLRPIQ 1374
            DL D Y  + K    G+  +   GP  +   D ++S+NPL++P Q
Sbjct: 400  DLQDKYYEEYKMYELGELASSFVGPKVK---DCLISWNPLMQPKQ 441


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 611 GLNGRIHYELDPKDREEGSFVIDPASGVIRTNKALDRESVATH 653
           G+ GR+H          G F ++PA G  R  +AL +  + T+
Sbjct: 403 GMAGRVHISNATLSFLNGEFEVEPAHGEDR-EEALQKAGIVTY 444


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
            protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 2034 WGVNITIGSPILQIAVFVPESIWTRETGEGS 2064
            W  N  I    L + ++VP+    R  G+GS
Sbjct: 116  WNPNTNISEDCLYLNIWVPQKYRLRHKGDGS 146


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
            protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 2034 WGVNITIGSPILQIAVFVPESIWTRETGEGS 2064
            W  N  I    L + ++VP+    R  G+GS
Sbjct: 116  WNPNTNISEDCLYLNIWVPQKYRLRHKGDGS 146


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein protein.
          Length = 81

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 1642 LPCQCYAAGSENSSCEAATGQCHCRPGVIGRACDACANAYA 1682
            LPC+C+  G   S      G      G    +C  C  A+A
Sbjct: 41   LPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFA 81


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,125
Number of Sequences: 429
Number of extensions: 36665
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 8
length of query: 2796
length of database: 140,377
effective HSP length: 70
effective length of query: 2726
effective length of database: 110,347
effective search space: 300805922
effective search space used: 300805922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)