Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000467-TA|BGIBMGA000467-PA|IPR002126|Cadherin,
IPR006209|EGF-like, IPR012680|Laminin G, subdomain 2,
IPR002049|EGF-like, laminin, IPR001879|Hormone receptor,
extracellular, IPR000203|GPS, IPR000152|Aspartic acid and asparagine
hydroxylation site, IPR013032|EGF-like region,
IPR000005|Helix-turn-helix, AraC type, IPR000083|Fibronectin, type I,
IPR006210|EGF, IPR001791|Laminin G, IPR001881|EGF-like
calcium-binding, IPR000742|EGF-like, type 3
(2796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32190.1 68414.m03959 expressed protein 38 0.13
At1g55325.1 68414.m06320 expressed protein 36 0.52
At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa... 36 0.52
At5g42620.1 68418.m05188 expressed protein 35 0.91
At1g16270.1 68414.m01948 protein kinase family protein contains ... 35 0.91
At5g16300.2 68418.m01906 expressed protein 34 1.2
At5g16300.1 68418.m01905 expressed protein 34 1.2
At5g09670.2 68418.m01119 loricrin-related contains weak similari... 34 1.2
At5g09670.1 68418.m01118 loricrin-related contains weak similari... 34 1.2
At1g54520.1 68414.m06218 expressed protein 34 1.6
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo... 33 2.1
At1g73980.1 68414.m08568 phosphoribulokinase/uridine kinase fami... 32 4.8
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 37.5 bits (83), Expect = 0.13
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 1486 IQDVRIGTAQSLLNRPTVRENVRDGCQSRADCMLSICPPYSKCVTSWDSSTCTCEAGRVG 1545
IQD+ T +S L T+ + +R +S C +C P +C+C R
Sbjct: 267 IQDMENTTTKSRLK--TIWQEIRRRDESTGCCCSGLCRP-----------SCSCPKPRCP 313
Query: 1546 -PQCVSACELGPCGAARCVPDQTPKGYSCACEPGYTLTTSGCIESGKEECPGGWWGGSAC 1604
P C C G CG +C +SC +P + +S C + K C +G C
Sbjct: 314 KPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKP--SCVSSCCCPTFK--C-SSCFGKPKC 368
Query: 1605 GPCAC 1609
C+C
Sbjct: 369 PKCSC 373
>At1g55325.1 68414.m06320 expressed protein
Length = 1921
Score = 35.5 bits (78), Expect = 0.52
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 1119 PGLKRRHRIHLKLKFATQTTSGLLLYNGRYNERHDFLALELVSSEAGRGGGPGLRFSFSL 1178
P +++ RI++K ++ + + L+ Y G Y+ HD + +V +GGG F +
Sbjct: 1804 PSMRKDSRINVKEEWPSVLSVSLIDYYGGYDNAHDKILQGIVK----QGGGTKETRDFEV 1859
Query: 1179 GGGKSEITVEGNVGDGSWHTVEIEYFNRTITMILDDCDKVLSLAGAADFGLK 1230
++ + SW TV Y +R T + CD VL L F K
Sbjct: 1860 ESHLILESIAAELHALSWMTVSPAYLDRR-TALPFHCDMVLRLRRLLHFADK 1910
>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase family
protein simlar to inositol polyphosphate 5-phosphatase I
(GI:10444261) and II (GI:10444263) [Arabidopsis
thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 585
Score = 35.5 bits (78), Expect = 0.52
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 2605 GIATPSPNPLPNPDLTSDVYLNRHRLKPSIL--ENVHDTYVASVDASRLP---LDNRYGV 2659
G TPSP P+P +L +D + R K S T ++ + +P LD R+ V
Sbjct: 139 GYHTPSPIPVPMAELDAD-FSGSTRQKNSTFFHRRSFQTPSSTWNDPSIPQPGLDRRFSV 197
Query: 2660 MEDELMYGVLPIDREKQMPYDPNYPISPTMYRLPGNPYGSKTYLSSRTSDYGYSPTKYMN 2719
D + + P D +DP++ S + +R P + + S R SDY P+ Y
Sbjct: 198 C-DRVFFSHRPSD------FDPSFRGSSSSHR-PSDYSRRPSDYSRRPSDYSRRPSDYSR 249
Query: 2720 DTNVYGSRDF-RDSGVSTRDHDGYPPRDFRDS 2750
+ D+ R S +R D P DF S
Sbjct: 250 RPSDSRPSDYSRPSDYYSRPSDYSRPSDFSRS 281
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 34.7 bits (76), Expect = 0.91
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 1040 TSFTCQCPEGFTGVNCETILTKASCEVDGDGSICRSGSQCVARRE--GGILCQGCS 1093
T C C GFTG++C T + C + G +C +G C R G CQ S
Sbjct: 646 TQGVCICENGFTGIDCSTAICDEQCSL--HGGVCDNG-VCEFRCSDYAGYTCQNSS 698
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 34.7 bits (76), Expect = 0.91
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 371 YEVELAEDEPPGTPVVTLTATDADED--NRLH----YEITGGNTRGR---FSITSQNGRG 421
Y + + + PG + L + DED N + E GG+ + R FS++ +G
Sbjct: 214 YRTHVVKYQLPGEDLDALVSVSCDEDLLNMMEEYNEMENRGGSQKLRMFLFSVSDLDG-A 272
Query: 422 LITVAQPLDFKQERRYVLTVSATDSGGRSDTAMVQINITDANNYA 466
L+ V + D E +YV+ V+ D G RS++ + ++ + ANN A
Sbjct: 273 LLGVNKS-DVDSEFQYVVAVNDMDLGSRSNSTLNGLDSSSANNLA 316
>At5g16300.2 68418.m01906 expressed protein
Length = 1034
Score = 34.3 bits (75), Expect = 1.2
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 1781 DLSTACANTPRLYGADVV--VAEGILLELM--DYELRQAGLNLTHSQD-KDYVRNLLKST 1835
D+S +C R G +V V+ L+E + EL A + + D KD +R L
Sbjct: 343 DVSKSCLTWLRECGGQIVGKVSGKHLIEAIVTGAELGSAEKLIRETMDSKDVLRGSLDWL 402
Query: 1836 NTILNVEYEREWKRIRELT-GHGAELLVQKFDEYIAVLAESQHDTYTSPFEIVTKDVVIS 1894
++ E E W RIREL G L + F++ E S FE +TK V +
Sbjct: 403 KSVFGSEVELPWNRIRELVLGDDLNLWDEIFEK---AFVERMKSIIDSKFENLTKAVNV- 458
Query: 1895 VDTVTSESIYGFEPTQLNRLNVDSY 1919
++S++ + ++N +Y
Sbjct: 459 -----ADSVHAYSEITGEKINFQAY 478
>At5g16300.1 68418.m01905 expressed protein
Length = 1068
Score = 34.3 bits (75), Expect = 1.2
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 1781 DLSTACANTPRLYGADVV--VAEGILLELM--DYELRQAGLNLTHSQD-KDYVRNLLKST 1835
D+S +C R G +V V+ L+E + EL A + + D KD +R L
Sbjct: 343 DVSKSCLTWLRECGGQIVGKVSGKHLIEAIVTGAELGSAEKLIRETMDSKDVLRGSLDWL 402
Query: 1836 NTILNVEYEREWKRIRELT-GHGAELLVQKFDEYIAVLAESQHDTYTSPFEIVTKDVVIS 1894
++ E E W RIREL G L + F++ E S FE +TK V +
Sbjct: 403 KSVFGSEVELPWNRIRELVLGDDLNLWDEIFEK---AFVERMKSIIDSKFENLTKAVNV- 458
Query: 1895 VDTVTSESIYGFEPTQLNRLNVDSY 1919
++S++ + ++N +Y
Sbjct: 459 -----ADSVHAYSEITGEKINFQAY 478
>At5g09670.2 68418.m01119 loricrin-related contains weak similarity to
Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 34.3 bits (75), Expect = 1.2
Identities = 45/193 (23%), Positives = 66/193 (34%), Gaps = 17/193 (8%)
Query: 1481 FFEGCIQDVRIGTAQSLLNRPTVRENVRD---GCQSRADCMLSI-----CPPYSKCVTSW 1532
F EGC + R + + + R N+ D + +A +S C +S C
Sbjct: 233 FLEGCDKAARGRSGLCIKHGGGKRCNIEDCTRSAEGQAGLCISHGGGKRCQYFSGCEKGA 292
Query: 1533 DSSTCTCEAGRVGPQCV-SACELGPCGAARCVPDQTPKGYSCACEPGYTLTTSGCIESGK 1591
ST C+A G +C+ S C G G+ G C + G + S + G
Sbjct: 293 QGSTNYCKAHGGGKRCIFSGCSKGAEGSTPLCKAH-GGGKRCLADGGGICSKS--VHGGT 349
Query: 1592 EECPGGWWGGSACGPCACDVT-RGYHPHCNKENGKCHCKENHYKPEGTAECLPCQCYAAG 1650
C GG C C + RG C K G CK + C+ + G
Sbjct: 350 NFCV-AHGGGKRCVVVGCTKSARGRTDSCVKHGGGKRCKIIDCEKSAQGSTDFCKAHGGG 408
Query: 1651 SENSSCEAATGQC 1663
C G+C
Sbjct: 409 KR---CSWGDGKC 418
>At5g09670.1 68418.m01118 loricrin-related contains weak similarity to
Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 34.3 bits (75), Expect = 1.2
Identities = 45/193 (23%), Positives = 66/193 (34%), Gaps = 17/193 (8%)
Query: 1481 FFEGCIQDVRIGTAQSLLNRPTVRENVRD---GCQSRADCMLSI-----CPPYSKCVTSW 1532
F EGC + R + + + R N+ D + +A +S C +S C
Sbjct: 233 FLEGCDKAARGRSGLCIKHGGGKRCNIEDCTRSAEGQAGLCISHGGGKRCQYFSGCEKGA 292
Query: 1533 DSSTCTCEAGRVGPQCV-SACELGPCGAARCVPDQTPKGYSCACEPGYTLTTSGCIESGK 1591
ST C+A G +C+ S C G G+ G C + G + S + G
Sbjct: 293 QGSTNYCKAHGGGKRCIFSGCSKGAEGSTPLCKAH-GGGKRCLADGGGICSKS--VHGGT 349
Query: 1592 EECPGGWWGGSACGPCACDVT-RGYHPHCNKENGKCHCKENHYKPEGTAECLPCQCYAAG 1650
C GG C C + RG C K G CK + C+ + G
Sbjct: 350 NFCV-AHGGGKRCVVVGCTKSARGRTDSCVKHGGGKRCKIIDCEKSAQGSTDFCKAHGGG 408
Query: 1651 SENSSCEAATGQC 1663
C G+C
Sbjct: 409 KR---CSWGDGKC 418
>At1g54520.1 68414.m06218 expressed protein
Length = 391
Score = 33.9 bits (74), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 2679 YDPNYPISPTMYRLPGNPYGSKTYLSSRTSDYGYSPTKYMNDTNVYGSR 2727
YDPN ++ + R+ GN + S++ SS +S YS + N + Y +R
Sbjct: 99 YDPNSALAASGGRIGGNSFSSRSRSSSSSSSQSYSVPRTSNPSFSYSAR 147
>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
(EPI64 protein) {Homo sapiens}; contains Pfam profile
PF00566: TBC domain
Length = 777
Score = 33.5 bits (73), Expect = 2.1
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1753 FYQLRKQLHKIETGELTMNTFV-GVRVAADLSTACANTPRLYGADVVVAEGILLELMDYE 1811
FY + + ++ G + T V G+ VAAD S + P +V++ G+ + L E
Sbjct: 197 FYDVERS--DVQDGSSSDGTGVSGIPVAADASPL-STCPWKEELEVLIRGGVPMALRG-E 252
Query: 1812 LRQAGLNLTHSQDKDYVRNLLKSTNTILNVEYE 1844
L QA + + + KDY +NLL + ++ +E E
Sbjct: 253 LWQAFVGVRKRRCKDYYQNLLAADGSVNTIEQE 285
>At1g73980.1 68414.m08568 phosphoribulokinase/uridine kinase family
protein weak similarity to SP|Q59190 Uridine kinase (EC
2.7.1.48) (Uridine monophosphokinase) (Cytidine
monophosphokinase) {Borrelia burgdorferi}; contains Pfam
profile PF00485: Phosphoribulokinase / Uridine kinase
family
Length = 643
Score = 32.3 bits (70), Expect = 4.8
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 784 VTDVNDNAPVMKDFQIIFNNYKDCFPVGPFGRVPAYDADVTDKLQYRILSGNNANLILLN 843
V D N + P + D+ + +N P +VP YD + ++ YR L ++ +++L
Sbjct: 106 VIDGNFDDPRLTDYDTLLDNIHGLRDGKPV-QVPIYDFKSSSRIGYRTLEVPSSRIVILE 164
Query: 844 ETTGSMTLSPQLNTNVPKLATMEVSVTDGVN 874
G LS +L L + VSVT GV+
Sbjct: 165 ---GIYALSEKLR----PLLDLRVSVTGGVH 188
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,166,414
Number of Sequences: 28952
Number of extensions: 2944424
Number of successful extensions: 6659
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6641
Number of HSP's gapped (non-prelim): 27
length of query: 2796
length of database: 12,070,560
effective HSP length: 94
effective length of query: 2702
effective length of database: 9,349,072
effective search space: 25261192544
effective search space used: 25261192544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 68 (31.5 bits)
- SilkBase 1999-2023 -