GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000466-TA|BGIBMGA000466-PA|IPR002126|Cadherin
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   5.5  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   7.3  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 105 DYYSLPIRILVTGEDCSRRHADLYDIDFDRVYDQNDAALQYEDSYTIRDKREVVYQESID 164
           DYY L +++       S++H+ + +++      + +  +  E    I D+R      S D
Sbjct: 238 DYYKLSLKVEELTVQASQKHSHIAEMESSLQTSKQEVLILKEKIKKIEDERMRQMSVSSD 297

Query: 165 WRLLEAEELVSSQYNVLSTAYPWSDAMFEE 194
             L    + V+     +ST+    +   EE
Sbjct: 298 RTLDSQLQTVNENITRISTSIELKNTALEE 327


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 326 IVYHHKELNDTDIAKRVKREL-RNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSR 384
           I+Y +  L D  IA+RV REL ++    F++A  + +V  E    + +   ++  RK S+
Sbjct: 204 IIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIE---SLSIDLTESSLRKASK 260

Query: 385 DIFDVKSTRLEI 396
            I  ++    E+
Sbjct: 261 SILSLEQKVNEV 272


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,415
Number of Sequences: 5004
Number of extensions: 86317
Number of successful extensions: 221
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 2
length of query: 460
length of database: 2,362,478
effective HSP length: 75
effective length of query: 385
effective length of database: 1,987,178
effective search space: 765063530
effective search space used: 765063530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)