GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000466-TA|BGIBMGA000466-PA|IPR002126|Cadherin
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0460 + 4059640-4059810,4059904-4060038,4060157-4060240,406...    33   0.63 
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229...    30   3.4  

>08_01_0460 +
           4059640-4059810,4059904-4060038,4060157-4060240,
           4061068-4061097,4062183-4062227,4062352-4062417
          Length = 176

 Score = 32.7 bits (71), Expect = 0.63
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 318 VDSDHRLKIVYHHKELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
           V+ D   +I+ H K  + T I    + +L   +    +  Y     EE    V+     +
Sbjct: 32  VEMDLLQRILPHCKMEDLTRIENNTEMDLTPVTDKLWKLFYTRQFGEENANQVVKRMSMS 91

Query: 378 RSRKQSRDIFDVKSTRLEIGWHVRCGHEIGRGDHTSKAGSRETRCTLLQGCGSRRHLSAK 437
            +R + +D+FD K T+ +  +  + G  + +    +KAG +      LQ  G      +K
Sbjct: 92  GARYKWKDLFDAK-TKKQKEYEEKMGQRLAKKYEAAKAGKKHFLAGCLQISGKNESCYSK 150

Query: 438 K 438
           +
Sbjct: 151 E 151


>05_01_0294 -
           2291175-2291223,2291591-2292039,2292143-2292211,
           2292397-2292449,2292492-2294478
          Length = 868

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 304 VSILFTFNCDQTYIVDSDHRLKIVYHHKELNDTD-IAKRVKRELRNQSPYFEQALYVASV 362
           +S  F FN    Y +     LKI+ ++K  N  + IA  VK  L+     F + L V+++
Sbjct: 158 LSYYFLFNAGIKYKLFDPSGLKIILNYKRCNYLEFIAGNVKATLQMHLVTFAKKLAVSNM 217

Query: 363 AEEQPPGV 370
           A+++  GV
Sbjct: 218 ADDKLLGV 225


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,023
Number of Sequences: 37544
Number of extensions: 527273
Number of successful extensions: 1253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 2
length of query: 460
length of database: 14,793,348
effective HSP length: 85
effective length of query: 375
effective length of database: 11,602,108
effective search space: 4350790500
effective search space used: 4350790500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)