Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000466-TA|BGIBMGA000466-PA|IPR002126|Cadherin
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 37 0.039
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.052
SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_32317| Best HMM Match : Cadherin (HMM E-Value=1.5e-28) 33 0.48
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0) 32 0.84
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.84
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 31 2.6
SB_4448| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_5412| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 30 4.5
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 36.7 bits (81), Expect = 0.039
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 351 PYFEQALYVASVAEEQPPGVIVTTVKAR 378
PYF Q +Y+A V E QP G VT V R
Sbjct: 587 PYFSQPIYIAQVPENQPSGTFVTVVVGR 614
Score = 29.5 bits (63), Expect = 5.9
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 307 LFTFNCDQTYIVDSDHRLKIVYHHKELNDTDIAKRVKRELRNQS---PYFEQALYVASVA 363
L F DQT + LK+ + + D VK ++ N + PYF+Q LY +
Sbjct: 1925 LLDFERDQT-----QYNLKVKATEQIPDGLDSTVDVKIDVINANDHFPYFDQQLYSVQIP 1979
Query: 364 EEQPPGVIVTTVKAR 378
E GV+V V A+
Sbjct: 1980 ESTAVGVLVQEVTAK 1994
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 36.3 bits (80), Expect = 0.052
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 340 KRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQS 383
K + ++++ P FE+ LY +V E+ PP V TVKA+S+ S
Sbjct: 960 KVILEDVKDSPPLFEKPLYEVTVPEDTPPRSPVITVKAKSQDLS 1003
>SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 33.5 bits (73), Expect = 0.36
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 344 RELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
R+ + SP F +ALY + + E +PPG V V A
Sbjct: 409 RDENDNSPIFSRALYSSPIYENEPPGTFVIQVSA 442
>SB_32317| Best HMM Match : Cadherin (HMM E-Value=1.5e-28)
Length = 331
Score = 33.1 bits (72), Expect = 0.48
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 319 DSDHRLKIVYHHKELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
D +++ K++Y+ + D D ++ + P F Q+ Y A V E P G V V A
Sbjct: 76 DLEYKGKVIYN---ITDGDENLIYVDDVNDNDPVFNQSKYAADVLENSPTGTPVLRVHAS 132
Query: 379 SRKQ 382
R Q
Sbjct: 133 DRDQ 136
>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2225
Score = 32.3 bits (70), Expect = 0.84
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 343 KRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++E + +P F ++LY+A+++E P V TVKA
Sbjct: 366 QKECNDVAPAFNRSLYLATISESTPVDTAVVTVKA 400
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.3 bits (70), Expect = 0.84
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 256 LTAFLPRTVQKMCKVQFLDVSDPRFLIENSQGDLVAADDVCIQEPMWKVS----ILFTFN 311
LTA +P ++ KV+FL VS + + D++ + C P + + + F
Sbjct: 222 LTASVPLDAEQDTKVEFLGVSSTNGSVAIAIDDIMITTENCTTSPAYAATGYKCASYEFQ 281
Query: 312 CDQTYIVDSDHRLKIVYHHKELNDTDIAKRVKREL 346
C + + R Y+ + +D D K EL
Sbjct: 282 CTSGHCISGSSRCDSDYNCMDSSDEDGCKCFTNEL 316
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 332 ELNDTDIAKRVKR-ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRD 385
+LN T + + + + +P F +A Y A V+EE G V V A R +D
Sbjct: 1742 QLNSTTLHLNISLVDANDNNPTFTKAAYTAHVSEEATAGTNVIMVNATERDSGKD 1796
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
+ + P F Q+ Y A+V E P G VT V AR
Sbjct: 3071 DFNDNQPQFNQSEYSATVLENMPVGTKVTMVTAR 3104
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSR 380
+L + P F++A++ AS+AE G VT V A R
Sbjct: 5401 DLNDNPPAFDKAVFNASIAENSESGASVTRVTASDR 5436
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 332 ELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
+L+ T +A + + +P F + ++ +V+E+ PG +VT+V A
Sbjct: 2207 KLSTTKVATIYVTDANDHAPVFTKRIFRGTVSEDVRPGYVVTSVSA 2252
>SB_4448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 332 ELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
+L+ T +A + + +P F + ++ +V+E+ PG +VT+V A
Sbjct: 38 KLSTTKVATIYVTDANDHAPVFTKRIFRGTVSEDVRPGYVVTSVSA 83
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 316 YIVDSDHRLKIVYHHKELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTV 375
Y + +L++ + +D + + +P F + +Y S+ EE P G V TV
Sbjct: 1842 YETQREFKLRLTISDGKTSDFGFLTIKVTDANDNAPLFSKLVYEVSLREESPAGTSVVTV 1901
Query: 376 KA 377
A
Sbjct: 1902 SA 1903
>SB_5412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 30.3 bits (65), Expect = 3.4
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 88 NLFTFYVDSTSERIRDIDYYSLPIRILVTGEDCSRRHADLYDIDFDRVYDQNDAALQYED 147
N+ Y DS E + D D I +D ++L D+ D V D N+ Y+D
Sbjct: 73 NIEDVYDDSNIEDVYD-DSVDDDNNIEDYYDDSVDDDSNLEDVYDDSVDDDNNIEDVYDD 131
Query: 148 SYTIRDKREVVYQESID 164
S + EVVY +S+D
Sbjct: 132 SVDDDNNIEVVYDDSVD 148
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 348 NQSPYFEQALYVASVAEEQPPGVIVTTVKARSR 380
+ +P F Q Y+ S+AE PGV + V A R
Sbjct: 231 DHAPVFTQNSYLGSIAENTKPGVSILRVSAADR 263
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 93 YVDSTSERIRDIDYYS-LPIRILVTGEDCSRRHADLYD 129
Y D + I+D+DY L + +++ DCS H LYD
Sbjct: 431 YHDPEYDSIQDLDYEDELDLVAVLSSRDCSTGHIGLYD 468
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.5 bits (63), Expect = 5.9
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 303 KVSILFTFNCDQTYIVDSDHRLKIVYHHKELNDTDIAKRV-----KRELRNQSPYFEQAL 357
K + NC + + R +I+ + +N+ ++K + K + + PY E+A
Sbjct: 5 KTHVKRPMNCFMVW--SREKRCQILQENPGINNARLSKLLGMAWKKLSVEEKEPYIEKAK 62
Query: 358 YVASVAEEQPPGVIVTTVKARSRKQSRDIFDVKSTRLEIGWHVRCGHEIGRGDHTS 413
++ + +E+ P + +S+ FD + L I CG GRG S
Sbjct: 63 HLTEMHKEKHPDYKYQPKRRKSKSSKEKGFDAQGVALNIS--SACG---GRGSEDS 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,337
Number of Sequences: 59808
Number of extensions: 637592
Number of successful extensions: 1691
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 77
length of query: 460
length of database: 16,821,457
effective HSP length: 85
effective length of query: 375
effective length of database: 11,737,777
effective search space: 4401666375
effective search space used: 4401666375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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