GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000466-TA|BGIBMGA000466-PA|IPR002126|Cadherin
         (460 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    28   0.46 
L76038-1|AAC27383.1|  683|Anopheles gambiae prophenoloxidase pro...    26   1.9  
AF031626-1|AAD01936.1|  683|Anopheles gambiae prophenoloxidase p...    26   1.9  

>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVT 373
           ++ +  P F+    V  VAE+ PPG++ T
Sbjct: 162 DINDNEPIFKPFASVLEVAEDSPPGILTT 190



 Score = 27.9 bits (59), Expect = 0.61
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 348 NQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRDI 386
           + +P F +  Y  S+AE    GV V TV A    Q++ +
Sbjct: 951 DNNPKFRKPFYKHSIAENSQYGVAVCTVVAEDADQNKTV 989


>L76038-1|AAC27383.1|  683|Anopheles gambiae prophenoloxidase
           protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 293 DDVCIQEPMWKVSILFTFNCDQTYIVDSDHRLKIVYH-HKEL 333
           +D+ +    W   +++ F+     IVD D R ++ Y+ H++L
Sbjct: 199 EDIGVNLHHWHWHLVYPFDASNRAIVDKDRRGELFYYMHQQL 240


>AF031626-1|AAD01936.1|  683|Anopheles gambiae prophenoloxidase
           protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 293 DDVCIQEPMWKVSILFTFNCDQTYIVDSDHRLKIVYH-HKEL 333
           +D+ +    W   +++ F+     IVD D R ++ Y+ H++L
Sbjct: 199 EDIGVNLHHWHWHLVYPFDASNRAIVDKDRRGELFYYMHQQL 240


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,601
Number of Sequences: 2123
Number of extensions: 18608
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 5
length of query: 460
length of database: 516,269
effective HSP length: 66
effective length of query: 394
effective length of database: 376,151
effective search space: 148203494
effective search space used: 148203494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)