Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000466-TA|BGIBMGA000466-PA|IPR002126|Cadherin
(460 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY354497-1|AAR10443.1| 2916|Homo sapiens cadherin protein protein. 38 0.074
BC036025-1|AAH36025.1| 1070|Homo sapiens protocadherin 8 protein. 35 0.69
AY013873-1|AAK21986.1| 973|Homo sapiens protocadherin ARCADLIN ... 35 0.69
AL139085-5|CAI14111.1| 973|Homo sapiens protocadherin 8 protein. 35 0.69
AL139085-4|CAI14110.1| 1070|Homo sapiens protocadherin 8 protein. 35 0.69
AF061573-1|AAC70009.2| 1070|Homo sapiens protocadherin protein. 35 0.69
X15696-1|CAA33731.1| 1085|Homo sapiens protein ( Human muscle mR... 34 0.92
X13988-1|CAA32167.1| 1940|Homo sapiens protein ( Human mRNA for ... 34 0.92
X13100-1|CAA31492.1| 1167|Homo sapiens myosin heavy chain (1167 ... 34 0.92
AY517555-1|AAT44528.1| 941|Homo sapiens hypothetical rhabdomyos... 34 0.92
BC113607-1|AAI13608.1| 803|Homo sapiens protocadherin gamma sub... 34 1.2
BC112088-1|AAI12089.1| 803|Homo sapiens protocadherin gamma sub... 34 1.2
BC093879-1|AAH93879.1| 818|Homo sapiens protocadherin gamma sub... 34 1.2
BC093877-1|AAH93877.1| 818|Homo sapiens protocadherin gamma sub... 34 1.2
AF152522-1|AAD43782.1| 820|Homo sapiens protocadherin gamma B6 ... 34 1.2
AF152521-1|AAD43781.1| 818|Homo sapiens protocadherin gamma B5 ... 34 1.2
AF152520-1|AAD43780.1| 803|Homo sapiens protocadherin gamma B4 ... 34 1.2
AF152335-1|AAD43729.1| 930|Homo sapiens protocadherin gamma B6 ... 34 1.2
AF152334-1|AAD43728.1| 923|Homo sapiens protocadherin gamma B5 ... 34 1.2
AF152333-1|AAD43727.1| 923|Homo sapiens protocadherin gamma B4 ... 34 1.2
AB053446-1|BAB61903.2| 3434|Homo sapiens KIAA1773 protein protein. 34 1.2
X87241-1|CAA60685.1| 4590|Homo sapiens homologue of Drosophila F... 33 1.6
BC112083-1|AAI12084.1| 878|Homo sapiens protocadherin gamma sub... 33 1.6
BC112081-1|AAI12082.1| 878|Homo sapiens protocadherin gamma sub... 33 1.6
BC103928-1|AAI03929.1| 810|Homo sapiens protocadherin gamma sub... 33 1.6
BC103927-1|AAI03928.1| 810|Homo sapiens protocadherin gamma sub... 33 1.6
BC103926-1|AAI03927.1| 810|Homo sapiens protocadherin gamma sub... 33 1.6
AF152526-1|AAD43786.1| 878|Homo sapiens protocadherin gamma C5 ... 33 1.6
AF152517-1|AAD43777.1| 810|Homo sapiens protocadherin gamma B1 ... 33 1.6
AF152339-1|AAD43733.1| 944|Homo sapiens protocadherin gamma C5 ... 33 1.6
AF152330-1|AAD43724.1| 927|Homo sapiens protocadherin gamma B1 ... 33 1.6
AY354498-1|AAR10444.1| 702|Homo sapiens protocadherin protein p... 33 2.8
AK127704-1|BAC87093.1| 1366|Homo sapiens protein ( Homo sapiens ... 33 2.8
BC101805-1|AAI01806.1| 811|Homo sapiens protocadherin gamma sub... 32 4.9
AF152519-1|AAD43779.1| 814|Homo sapiens protocadherin gamma B3 ... 32 4.9
AF152518-1|AAD43778.1| 811|Homo sapiens protocadherin gamma B2 ... 32 4.9
AF152332-1|AAD43726.1| 929|Homo sapiens protocadherin gamma B3 ... 32 4.9
AF152331-1|AAD43725.1| 931|Homo sapiens protocadherin gamma B2 ... 32 4.9
X51593-1|CAA35942.1| 1085|Homo sapiens embryonic myosin heavy ch... 31 6.5
BC129807-1|AAI29808.1| 824|Homo sapiens protocadherin alpha 3 p... 31 6.5
BC069064-1|AAH69064.1| 824|Homo sapiens PCDHA3 protein protein. 31 6.5
AF152481-1|AAD43742.1| 824|Homo sapiens protocadherin alpha 3 s... 31 6.5
AF152311-1|AAD43705.1| 950|Homo sapiens protocadherin alpha 3 p... 31 6.5
AC005609-11|AAC34323.1| 824|Homo sapiens KIAA0345-like 11 protein. 31 6.5
>AY354497-1|AAR10443.1| 2916|Homo sapiens cadherin protein protein.
Length = 2916
Score = 37.9 bits (84), Expect = 0.074
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 307 LFTFNCDQTYIVDSDHRLKIVYHHK---ELNDTDIAKRVKRELRNQSPYFEQALYVASVA 363
L T C Y + + H L ++ L+ + ++ +++P F+Q LY ASV
Sbjct: 1220 LLTTTCPLDYEMKTQHILTVLALDDGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEASVK 1279
Query: 364 EEQPPGVIVTTVKARSR 380
E Q PG VT V+A R
Sbjct: 1280 ENQNPGEFVTRVEALDR 1296
>BC036025-1|AAH36025.1| 1070|Homo sapiens protocadherin 8 protein.
Length = 1070
Score = 34.7 bits (76), Expect = 0.69
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 348 NQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRD 385
+ +P F + +Y SV E PPG + TV AR R R+
Sbjct: 492 DNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRN 529
>AY013873-1|AAK21986.1| 973|Homo sapiens protocadherin ARCADLIN
protein.
Length = 973
Score = 34.7 bits (76), Expect = 0.69
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 348 NQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRD 385
+ +P F + +Y SV E PPG + TV AR R R+
Sbjct: 492 DNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRN 529
>AL139085-5|CAI14111.1| 973|Homo sapiens protocadherin 8 protein.
Length = 973
Score = 34.7 bits (76), Expect = 0.69
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 348 NQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRD 385
+ +P F + +Y SV E PPG + TV AR R R+
Sbjct: 492 DNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRN 529
>AL139085-4|CAI14110.1| 1070|Homo sapiens protocadherin 8 protein.
Length = 1070
Score = 34.7 bits (76), Expect = 0.69
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 348 NQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRD 385
+ +P F + +Y SV E PPG + TV AR R R+
Sbjct: 492 DNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRN 529
>AF061573-1|AAC70009.2| 1070|Homo sapiens protocadherin protein.
Length = 1070
Score = 34.7 bits (76), Expect = 0.69
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 348 NQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRD 385
+ +P F + +Y SV E PPG + TV AR R R+
Sbjct: 492 DNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRN 529
>X15696-1|CAA33731.1| 1085|Homo sapiens protein ( Human muscle mRNA
for embryonic myosin heavy chain (SMHCE). ).
Length = 1085
Score = 34.3 bits (75), Expect = 0.92
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 121 SRRHADLYDIDFDRVYDQNDAALQYEDSYTIRDKREVVYQES-IDWRLLEA-EELVSSQY 178
SR+ +L D ++ +AAL++E++ +R + E+ +S ID ++ E EE+ +
Sbjct: 675 SRKQIELEKADIQLALEEAEAALEHEEAKILRIQLELTQVKSEIDRKIAEKDEEIEQLKR 734
Query: 179 NVLSTAYPWSDAMFEESVARNRSRTKRSHSLVPFDM-AIDVKIAEAKQWISET 230
N T A+ ++ R+R+ R + D+ I+++++ A + +ET
Sbjct: 735 NYQRTVETMQSAL--DAEVRSRNEAIRLKKKMEGDLNEIEIQLSHANRQAAET 785
>X13988-1|CAA32167.1| 1940|Homo sapiens protein ( Human mRNA for
embryonic myosin heavy chain. ).
Length = 1940
Score = 34.3 bits (75), Expect = 0.92
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 121 SRRHADLYDIDFDRVYDQNDAALQYEDSYTIRDKREVVYQES-IDWRLLEA-EELVSSQY 178
SR+ +L D ++ +AAL++E++ +R + E+ +S ID ++ E EE+ +
Sbjct: 1530 SRKQIELEKADIQLALEEAEAALEHEEAKILRIQLELTQVKSEIDRKIAEKDEEIEQLKR 1589
Query: 179 NVLSTAYPWSDAMFEESVARNRSRTKRSHSLVPFDM-AIDVKIAEAKQWISET 230
N T A+ ++ R+R+ R + D+ I+++++ A + +ET
Sbjct: 1590 NYQRTVETMQSAL--DAEVRSRNEAIRLKKKMEGDLNEIEIQLSHANRQAAET 1640
>X13100-1|CAA31492.1| 1167|Homo sapiens myosin heavy chain (1167 AA)
protein.
Length = 1167
Score = 34.3 bits (75), Expect = 0.92
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 121 SRRHADLYDIDFDRVYDQNDAALQYEDSYTIRDKREVVYQES-IDWRLLEA-EELVSSQY 178
SR+ +L D ++ +AAL++E++ +R + E+ +S ID ++ E EE+ +
Sbjct: 757 SRKQIELEKADIQLALEEAEAALEHEEAKILRIQLELTQVKSEIDRKIAEKDEEIEQLKR 816
Query: 179 NVLSTAYPWSDAMFEESVARNRSRTKRSHSLVPFDM-AIDVKIAEAKQWISET 230
N T A+ ++ R+R+ R + D+ I+++++ A + +ET
Sbjct: 817 NYQRTVETMQSAL--DAEVRSRNEAIRLKKKMEGDLNEIEIQLSHANRQAAET 867
>AY517555-1|AAT44528.1| 941|Homo sapiens hypothetical
rhabdomyosarcoma antigen MU-RMS-40.3 protein.
Length = 941
Score = 34.3 bits (75), Expect = 0.92
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 121 SRRHADLYDIDFDRVYDQNDAALQYEDSYTIRDKREVVYQES-IDWRLLEA-EELVSSQY 178
SR+ +L D ++ +AAL++E++ +R + E+ +S ID ++ E EE+ +
Sbjct: 531 SRKQIELEKADIQLALEEAEAALEHEEAKILRIQLELTQVKSEIDRKIAEKDEEIEQLKR 590
Query: 179 NVLSTAYPWSDAMFEESVARNRSRTKRSHSLVPFDM-AIDVKIAEAKQWISET 230
N T A+ ++ R+R+ R + D+ I+++++ A + +ET
Sbjct: 591 NYQRTVETMQSAL--DAEVRSRNEAIRLKKKMEGDLNEIEIQLSHANRQAAET 641
>BC113607-1|AAI13608.1| 803|Homo sapiens protocadherin gamma
subfamily B, 4 protein.
Length = 803
Score = 33.9 bits (74), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F Q+ Y+ VAE PPG ++ V+A
Sbjct: 442 DVNDNAPVFSQSSYIVHVAENNPPGASISQVRA 474
>BC112088-1|AAI12089.1| 803|Homo sapiens protocadherin gamma
subfamily B, 4, isoform 2 precursor protein.
Length = 803
Score = 33.9 bits (74), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F Q+ Y+ VAE PPG ++ V+A
Sbjct: 442 DVNDNAPVFSQSSYIVHVAENNPPGASISQVRA 474
>BC093879-1|AAH93879.1| 818|Homo sapiens protocadherin gamma
subfamily B, 5 protein.
Length = 818
Score = 33.9 bits (74), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 344 RELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
R++ + +P F QA Y+ SV E PPG + V A
Sbjct: 439 RDVNDNAPVFHQASYLVSVPENNPPGASIAQVCA 472
>BC093877-1|AAH93877.1| 818|Homo sapiens protocadherin gamma
subfamily B, 5 protein.
Length = 818
Score = 33.9 bits (74), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 344 RELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
R++ + +P F QA Y+ SV E PPG + V A
Sbjct: 439 RDVNDNAPVFHQASYLVSVPENNPPGASIAQVCA 472
>AF152522-1|AAD43782.1| 820|Homo sapiens protocadherin gamma B6
short form protein protein.
Length = 820
Score = 33.9 bits (74), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F+Q YV VAE PPG + V A
Sbjct: 444 DINDNAPVFDQTSYVVHVAENNPPGASIAQVSA 476
>AF152521-1|AAD43781.1| 818|Homo sapiens protocadherin gamma B5
short form protein protein.
Length = 818
Score = 33.9 bits (74), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 344 RELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
R++ + +P F QA Y+ SV E PPG + V A
Sbjct: 439 RDVNDNAPVFHQASYLVSVPENNPPGASIAQVCA 472
>AF152520-1|AAD43780.1| 803|Homo sapiens protocadherin gamma B4
short form protein protein.
Length = 803
Score = 33.9 bits (74), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F Q+ Y+ VAE PPG ++ V+A
Sbjct: 442 DVNDNAPVFSQSSYIVHVAENNPPGASISQVRA 474
>AF152335-1|AAD43729.1| 930|Homo sapiens protocadherin gamma B6
protein.
Length = 930
Score = 33.9 bits (74), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F+Q YV VAE PPG + V A
Sbjct: 444 DINDNAPVFDQTSYVVHVAENNPPGASIAQVSA 476
>AF152334-1|AAD43728.1| 923|Homo sapiens protocadherin gamma B5
protein.
Length = 923
Score = 33.9 bits (74), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 344 RELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
R++ + +P F QA Y+ SV E PPG + V A
Sbjct: 439 RDVNDNAPVFHQASYLVSVPENNPPGASIAQVCA 472
>AF152333-1|AAD43727.1| 923|Homo sapiens protocadherin gamma B4
protein.
Length = 923
Score = 33.9 bits (74), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F Q+ Y+ VAE PPG ++ V+A
Sbjct: 442 DVNDNAPVFSQSSYIVHVAENNPPGASISQVRA 474
>AB053446-1|BAB61903.2| 3434|Homo sapiens KIAA1773 protein protein.
Length = 3434
Score = 33.9 bits (74), Expect = 1.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 344 RELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
+++ + P F L SVAE QPPG +VTT+ A
Sbjct: 2833 QDVNDHGPAFPLNLLSTSVAENQPPGTLVTTLHA 2866
>X87241-1|CAA60685.1| 4590|Homo sapiens homologue of Drosophila Fat
protein protein.
Length = 4590
Score = 33.5 bits (73), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
+L P FEQ +Y A ++E P G VT VKA
Sbjct: 2385 DLNGNPPLFEQQIYEARISEHAPHGHFVTCVKA 2417
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 314 QTYIVDSDHRLKIVYHHKELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPG---V 370
Q +V SDH KI +L+ T I ++ + P F +Y +V+E+ P G
Sbjct: 2886 QIKVVASDHGEKI-----QLSSTAIVDVTVTDVNDSPPRFTAEIYKGTVSEDDPQGGVIA 2940
Query: 371 IVTTVKARSRKQSRDI 386
I++T A S + +R +
Sbjct: 2941 ILSTTDADSEEINRQV 2956
>BC112083-1|AAI12084.1| 878|Homo sapiens protocadherin gamma
subfamily C, 5, isoform 2 precursor protein.
Length = 878
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F Q LY A + E +PPG ++ TV A
Sbjct: 446 DVNDNAPRFNQQLYTAYILENRPPGSLLCTVAA 478
>BC112081-1|AAI12082.1| 878|Homo sapiens protocadherin gamma
subfamily C, 5, isoform 2 precursor protein.
Length = 878
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F Q LY A + E +PPG ++ TV A
Sbjct: 446 DVNDNAPRFNQQLYTAYILENRPPGSLLCTVAA 478
>BC103928-1|AAI03929.1| 810|Homo sapiens protocadherin gamma
subfamily B, 1 protein.
Length = 810
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F QA YV V+E PPG + V A
Sbjct: 440 DINDNAPVFHQASYVVHVSENNPPGASIAQVSA 472
>BC103927-1|AAI03928.1| 810|Homo sapiens protocadherin gamma
subfamily B, 1 protein.
Length = 810
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F QA YV V+E PPG + V A
Sbjct: 440 DINDNAPVFHQASYVVHVSENNPPGASIAQVSA 472
>BC103926-1|AAI03927.1| 810|Homo sapiens protocadherin gamma
subfamily B, 1 protein.
Length = 810
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F QA YV V+E PPG + V A
Sbjct: 440 DINDNAPVFHQASYVVHVSENNPPGASIAQVSA 472
>AF152526-1|AAD43786.1| 878|Homo sapiens protocadherin gamma C5
short form protein protein.
Length = 878
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F Q LY A + E +PPG ++ TV A
Sbjct: 446 DVNDNAPRFNQQLYTAYILENRPPGSLLCTVAA 478
>AF152517-1|AAD43777.1| 810|Homo sapiens protocadherin gamma B1
short form protein protein.
Length = 810
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F QA YV V+E PPG + V A
Sbjct: 440 DINDNAPVFHQASYVVHVSENNPPGASIAQVSA 472
>AF152339-1|AAD43733.1| 944|Homo sapiens protocadherin gamma C5
protein.
Length = 944
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F Q LY A + E +PPG ++ TV A
Sbjct: 446 DVNDNAPRFNQQLYTAYILENRPPGSLLCTVAA 478
>AF152330-1|AAD43724.1| 927|Homo sapiens protocadherin gamma B1
protein.
Length = 927
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F QA YV V+E PPG + V A
Sbjct: 440 DINDNAPVFHQASYVVHVSENNPPGASIAQVSA 472
>AY354498-1|AAR10444.1| 702|Homo sapiens protocadherin protein
protein.
Length = 702
Score = 32.7 bits (71), Expect = 2.8
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQS-RDIFDVKSTRLEIGWHVRCG 403
+L +Q P F Q Y ASV+E PG +V V A ++ D ++ T +++ G
Sbjct: 524 DLNDQPPLFSQQHYKASVSEAAAPGTVVMWVSASDADEAGSDHAWLRYTVVQLSAPCNLG 583
Query: 404 HEIGRGDHTSKAG 416
+ HT++ G
Sbjct: 584 SLQSKMVHTAECG 596
>AK127704-1|BAC87093.1| 1366|Homo sapiens protein ( Homo sapiens
cDNA FLJ45804 fis, clone NT2RI3005923, weakly similar
to Cadherin-related tumor suppressor precursor. ).
Length = 1366
Score = 32.7 bits (71), Expect = 2.8
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQS-RDIFDVKSTRLEIGWHVRCG 403
+L +Q P F Q Y ASV+E PG +V V A ++ D ++ T +++ G
Sbjct: 531 DLNDQPPLFSQQHYKASVSEAAAPGTVVMWVSASDADEAGSDHAWLRYTVVQLSAPCNLG 590
Query: 404 HEIGRGDHTSKAG 416
+ HT++ G
Sbjct: 591 SLESKMVHTAECG 603
>BC101805-1|AAI01806.1| 811|Homo sapiens protocadherin gamma
subfamily B, 2 protein.
Length = 811
Score = 31.9 bits (69), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F+Q Y+ VAE PPG + + A
Sbjct: 444 DVNDNAPVFQQTSYMVHVAENNPPGASIAQISA 476
>AF152519-1|AAD43779.1| 814|Homo sapiens protocadherin gamma B3
short form protein protein.
Length = 814
Score = 31.9 bits (69), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + P F QA Y VAE PPG + V+A
Sbjct: 444 DVNDNVPVFHQASYTVHVAENNPPGASIAHVRA 476
>AF152518-1|AAD43778.1| 811|Homo sapiens protocadherin gamma B2
short form protein protein.
Length = 811
Score = 31.9 bits (69), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F+Q Y+ VAE PPG + + A
Sbjct: 444 DVNDNAPVFQQTSYMVHVAENNPPGASIAQISA 476
>AF152332-1|AAD43726.1| 929|Homo sapiens protocadherin gamma B3
protein.
Length = 929
Score = 31.9 bits (69), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + P F QA Y VAE PPG + V+A
Sbjct: 444 DVNDNVPVFHQASYTVHVAENNPPGASIAHVRA 476
>AF152331-1|AAD43725.1| 931|Homo sapiens protocadherin gamma B2
protein.
Length = 931
Score = 31.9 bits (69), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P F+Q Y+ VAE PPG + + A
Sbjct: 444 DVNDNAPVFQQTSYMVHVAENNPPGASIAQISA 476
>X51593-1|CAA35942.1| 1085|Homo sapiens embryonic myosin heavy chain
(1085 AA) protein.
Length = 1085
Score = 31.5 bits (68), Expect = 6.5
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 121 SRRHADLYDIDFDRVYDQNDAALQYEDSYTIRDKREVVYQES-IDWRLLEA-EELVSSQY 178
SR+ +L D ++ +AAL++E++ +R + E+ +S ID ++ E EE+ +
Sbjct: 675 SRKQIELEKADIQLALEEAEAALEHEEAKILRIQLELTQVKSEIDRKIAEKDEEIEQLKR 734
Query: 179 NVLSTAYPWSDAMFEESVARNRSRTKRSHSLVPFDM-AIDVKIAEAKQWISET 230
N T A+ ++ R + R + D+ I+++++ A + +ET
Sbjct: 735 NYQRTVETMQSAL--DAEVRRANEAIRLKKKMEGDLNEIEIQLSHANRQAAET 785
>BC129807-1|AAI29808.1| 824|Homo sapiens protocadherin alpha 3
protein.
Length = 824
Score = 31.5 bits (68), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 332 ELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
EL T K ++ + +P FE+ +Y + E P G +V TV A
Sbjct: 221 ELTGTTQLKITVLDVNDNAPAFERTIYKVRLLENAPNGTLVVTVNA 266
Score = 31.1 bits (67), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
++ + +P F Q+ Y V E PPG + TV AR
Sbjct: 447 DVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
>BC069064-1|AAH69064.1| 824|Homo sapiens PCDHA3 protein protein.
Length = 824
Score = 31.5 bits (68), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 332 ELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
EL T K ++ + +P FE+ +Y + E P G +V TV A
Sbjct: 221 ELTGTTQLKITVLDVNDNAPAFERTIYKVRLLENAPNGTLVVTVNA 266
Score = 31.1 bits (67), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
++ + +P F Q+ Y V E PPG + TV AR
Sbjct: 447 DVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
>AF152481-1|AAD43742.1| 824|Homo sapiens protocadherin alpha 3
short form protein protein.
Length = 824
Score = 31.5 bits (68), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 332 ELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
EL T K ++ + +P FE+ +Y + E P G +V TV A
Sbjct: 221 ELTGTTQLKITVLDVNDNAPAFERTIYKVRLLENAPNGTLVVTVNA 266
Score = 31.1 bits (67), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
++ + +P F Q+ Y V E PPG + TV AR
Sbjct: 447 DVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
>AF152311-1|AAD43705.1| 950|Homo sapiens protocadherin alpha 3
protein.
Length = 950
Score = 31.5 bits (68), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 332 ELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
EL T K ++ + +P FE+ +Y + E P G +V TV A
Sbjct: 221 ELTGTTQLKITVLDVNDNAPAFERTIYKVRLLENAPNGTLVVTVNA 266
Score = 31.1 bits (67), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
++ + +P F Q+ Y V E PPG + TV AR
Sbjct: 447 DVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
>AC005609-11|AAC34323.1| 824|Homo sapiens KIAA0345-like 11 protein.
Length = 824
Score = 31.5 bits (68), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 332 ELNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
EL T K ++ + +P FE+ +Y + E P G +V TV A
Sbjct: 221 ELTGTTQLKITVLDVNDNAPAFERTIYKVRLLENAPNGTLVVTVNA 266
Score = 31.1 bits (67), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
++ + +P F Q+ Y V E PPG + TV AR
Sbjct: 447 DVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.322 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,522,127
Number of Sequences: 224733
Number of extensions: 2519848
Number of successful extensions: 5143
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5037
Number of HSP's gapped (non-prelim): 111
length of query: 460
length of database: 73,234,838
effective HSP length: 92
effective length of query: 368
effective length of database: 52,559,402
effective search space: 19341859936
effective search space used: 19341859936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 67 (31.1 bits)
- SilkBase 1999-2023 -