Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000466-TA|BGIBMGA000466-PA|IPR002126|Cadherin
(460 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006708-22|AAF60420.2| 335|Caenorhabditis elegans Hypothetical... 33 0.32
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 32 0.98
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 32 0.98
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 32 0.98
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z78013-9|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical pr... 31 1.7
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 31 1.7
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 31 1.7
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 31 2.3
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 31 2.3
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 30 3.0
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 30 3.9
U88311-2|AAB42350.2| 529|Caenorhabditis elegans Udp-glucuronosy... 29 5.2
AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 29 5.2
Z81579-6|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 29 6.9
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 29 6.9
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-... 29 6.9
>AC006708-22|AAF60420.2| 335|Caenorhabditis elegans Hypothetical
protein Y110A7A.2 protein.
Length = 335
Score = 33.5 bits (73), Expect = 0.32
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 295 VCIQEPMWKVSILFTFNCDQTYIVDSDHRLKIVYHHKELND-TDIAKRVKRE--LRNQSP 351
VC+ + W + + F CD T+ + SD + +++ +N+ +I + ++R LRN +
Sbjct: 218 VCLMKGEWDDILEWPFRCDVTFSILSDDKKELLTKTIYVNEMPEIQEFLERPEGLRNGTF 277
Query: 352 YFEQALYVASVAEEQPPGVIVTTVKARSRKQSR 384
F+ L +A V E G I +K K+ +
Sbjct: 278 GFQNFLPLAKVTEFAADGDIFIQIKVLLSKEKQ 310
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 31.9 bits (69), Expect = 0.98
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 340 KRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRDIFDVK 390
+ V ++RN + YF LY + + QPP VIV +A + ++SR F+ +
Sbjct: 286 EEVHSKVRNLTHYF---LYYSIIVSRQPPSVIVKCGEAENHRRSRFWFNTE 333
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 31.9 bits (69), Expect = 0.98
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 340 KRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRDIFDVK 390
+ V ++RN + YF LY + + QPP VIV +A + ++SR F+ +
Sbjct: 286 EEVHSKVRNLTHYF---LYYSIIVSRQPPSVIVKCGEAENHRRSRFWFNTE 333
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 31.9 bits (69), Expect = 0.98
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 340 KRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRDIFDVK 390
+ V ++RN + YF LY + + QPP VIV +A + ++SR F+ +
Sbjct: 332 EEVHSKVRNLTHYF---LYYSIIVSRQPPSVIVKCGEAENHRRSRFWFNTE 379
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 333 LNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRDI 386
LN + V +++ + +P F++ Y +++EE P G + T+KA + + I
Sbjct: 561 LNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAVDNDEDQKI 614
Score = 28.7 bits (61), Expect = 9.1
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 316 YIVDSD-HRLKIVYHHKELNDTDI-AKRVKRELRNQSP-----YFEQALYVASVAEEQPP 368
Y+ D +R K+ H + + +R KR R ++P +F+Q YV + E+ P
Sbjct: 121 YVCDGKLYRSKMRIGHSIASKKKLETRRTKRWARRRNPDANAVHFQQEKYVKELPEDTPI 180
Query: 369 GVIVTTVKARSRKQSRDIF 387
I+ +VKA S S+ ++
Sbjct: 181 ETIIASVKA-SHASSQPLY 198
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
++ + +P FEQ Y +AE P G V T+ AR
Sbjct: 884 DVNDNAPTFEQLSYDLYIAENSPVGSTVGTIVAR 917
>Z78013-9|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 333 LNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRDI 386
LN + V +++ + +P F++ Y +++EE P G + T+KA + + I
Sbjct: 561 LNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAVDNDEDQKI 614
Score = 28.7 bits (61), Expect = 9.1
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 316 YIVDSD-HRLKIVYHHKELNDTDI-AKRVKRELRNQSP-----YFEQALYVASVAEEQPP 368
Y+ D +R K+ H + + +R KR R ++P +F+Q YV + E+ P
Sbjct: 121 YVCDGKLYRSKMRIGHSIASKKKLETRRTKRWARRRNPDANAVHFQQEKYVKELPEDTPI 180
Query: 369 GVIVTTVKARSRKQSRDIF 387
I+ +VKA S S+ ++
Sbjct: 181 ETIIASVKA-SHASSQPLY 198
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
++ + +P FEQ Y +AE P G V T+ AR
Sbjct: 884 DVNDNAPTFEQLSYDLYIAENSPVGSTVGTIVAR 917
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 333 LNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRDI 386
LN + V +++ + +P F++ Y +++EE P G + T+KA + + I
Sbjct: 561 LNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAVDNDEDQKI 614
Score = 28.7 bits (61), Expect = 9.1
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 316 YIVDSD-HRLKIVYHHKELNDTDI-AKRVKRELRNQSP-----YFEQALYVASVAEEQPP 368
Y+ D +R K+ H + + +R KR R ++P +F+Q YV + E+ P
Sbjct: 121 YVCDGKLYRSKMRIGHSIASKKKLETRRTKRWARRRNPDANAVHFQQEKYVKELPEDTPI 180
Query: 369 GVIVTTVKARSRKQSRDIF 387
I+ +VKA S S+ ++
Sbjct: 181 ETIIASVKA-SHASSQPLY 198
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKAR 378
++ + +P FEQ Y +AE P G V T+ AR
Sbjct: 884 DVNDNAPTFEQLSYDLYIAENSPVGSTVGTIVAR 917
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 31.1 bits (67), Expect = 1.7
Identities = 23/93 (24%), Positives = 35/93 (37%)
Query: 334 NDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSRKQSRDIFDVKSTR 393
N DI R+ R++ N++P+ QP I A S KQ ++ V
Sbjct: 13 NVRDIVNRLSRDMTNRNPFTVHQQVERRAPPPQPQAQIYVATYAYSSKQDDELSFVVGDL 72
Query: 394 LEIGWHVRCGHEIGRGDHTSKAGSRETRCTLLQ 426
+E+ V G G+ T G T L+
Sbjct: 73 IELISDVEDGWSKGKLKSTGAVGMFPTNFVTLK 105
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 30.7 bits (66), Expect = 2.3
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 317 IVDSDHRLKIVYHHKELNDTDI-----AKRVKRELRNQSPYFEQALYVASVAEEQPPGVI 371
+ + H HH L D + R+K +NQ ++ ++ E PP ++
Sbjct: 2662 LTNHSHFFADAEHHSALLDATLHTVYRMNRLKSLTKNQRDAVSD--FLVAITRELPPAMM 2719
Query: 372 VTTVKA--RSRKQSRDIFDVKSTRLEIGWHVRCGHEIGRGDHTSKAGSRETRCTLL 425
+ +K D+ + RL + RCG G G+H A +E R ++L
Sbjct: 2720 IKLLKKVITDILTMNDMNVLVPLRLITLHYERCGKYYGSGNHYGVASEQEKRLSML 2775
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 30.7 bits (66), Expect = 2.3
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 317 IVDSDHRLKIVYHHKELNDTDI-----AKRVKRELRNQSPYFEQALYVASVAEEQPPGVI 371
+ + H HH L D + R+K +NQ ++ ++ E PP ++
Sbjct: 2667 LTNHSHFFADAEHHSALLDATLHTVYRMNRLKSLTKNQRDAVSD--FLVAITRELPPAMM 2724
Query: 372 VTTVKA--RSRKQSRDIFDVKSTRLEIGWHVRCGHEIGRGDHTSKAGSRETRCTLL 425
+ +K D+ + RL + RCG G G+H A +E R ++L
Sbjct: 2725 IKLLKKVITDILTMNDMNVLVPLRLITLHYERCGKYYGSGNHYGVASEQEKRLSML 2780
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 30.3 bits (65), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKARSR 380
++ + +P FE++ Y V E PP IV V AR +
Sbjct: 934 DVNDNAPEFEKSWYTMEVLENSPPKTIVGKVVARDK 969
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 345 ELRNQSPYFEQALYVASVAEEQPPGVIVTTVKA 377
++ + +P FEQ LY V E+ P G+++ V A
Sbjct: 1115 DVNDNAPQFEQNLYDVEVMEDLPSGMVIHRVHA 1147
>U88311-2|AAB42350.2| 529|Caenorhabditis elegans
Udp-glucuronosyltransferase protein26 protein.
Length = 529
Score = 29.5 bits (63), Expect = 5.2
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 275 VSDPRFLIENSQGDLVAADDVCIQEPMWKVSILFTFNCDQTYIVD--SDHRLKIVYHHKE 332
++DPR + G L + +++ K +++ DQT + + H IV H KE
Sbjct: 367 LNDPRLSAFLTHGGLGSTNELAYCA---KPAVMVPIYGDQTRNANMLARHGSVIVLHKKE 423
Query: 333 LNDTDIAKRVKRELRNQSPYFEQALYVASVAEEQPPGVIVTTVK 376
L + K+ ++ Y E A +A + + QP T V+
Sbjct: 424 LANVQRVKKAVHDILYNKQYTESAERIAEMIKNQPKTPKETVVR 467
>AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical
protein Y113G7B.7 protein.
Length = 314
Score = 29.5 bits (63), Expect = 5.2
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 225 QWISETYASFAIPTTDRWQGICLKQSQFVNSLTAFLPRTVQKM---CKVQFLDVSDPRFL 281
+W+ E + S I T R + L+ S ++ L+ F PR ++++ C F ++S+ L
Sbjct: 143 EWLEEYHNSQNIYKTKRIKMEYLESSDVISMLSYFKPRVLEEIGIRCLANFTNISEVSNL 202
Query: 282 IENSQ 286
E Q
Sbjct: 203 FELEQ 207
>Z81579-6|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical protein
R13H4.1 protein.
Length = 1305
Score = 29.1 bits (62), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 302 WKVSILFTFNCDQTYIVDSDHRLKIVYHHKELND 335
WK++IL FN D IV RL ++ H + +D
Sbjct: 1102 WKITILPFFNVDVRSIVGQTTRLHLLVHRRSEHD 1135
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 6.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 351 PYFEQALYVASVAEEQPPGVIVTTVKA 377
P ++ +Y+ASVAE P V++ V+A
Sbjct: 1059 PVAKKPMYIASVAENSPANVVIVKVEA 1085
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 6.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 351 PYFEQALYVASVAEEQPPGVIVTTVKA 377
P ++ +Y+ASVAE P V++ V+A
Sbjct: 1059 PVAKKPMYIASVAENSPANVVIVKVEA 1085
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 6.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 351 PYFEQALYVASVAEEQPPGVIVTTVKA 377
P ++ +Y+ASVAE P V++ V+A
Sbjct: 1059 PVAKKPMYIASVAENSPANVVIVKVEA 1085
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 29.1 bits (62), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 344 RELRNQSPYFEQALYVASVAEEQPPGVIVTT 374
+++ + +P F+ A Y + EE P G IV T
Sbjct: 122 KDINDNAPVFDSAEYFVDIKEELPTGTIVFT 152
>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
nephrocystin-4-like protein protein.
Length = 1305
Score = 29.1 bits (62), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 302 WKVSILFTFNCDQTYIVDSDHRLKIVYHHKELND 335
WK++IL FN D IV RL ++ H + +D
Sbjct: 1102 WKITILPFFNVDVRSIVGQTTRLHLLVHRRSEHD 1135
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,269
Number of Sequences: 27539
Number of extensions: 466150
Number of successful extensions: 1013
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 56
length of query: 460
length of database: 12,573,161
effective HSP length: 84
effective length of query: 376
effective length of database: 10,259,885
effective search space: 3857716760
effective search space used: 3857716760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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