GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000466-TA|BGIBMGA000466-PA|IPR002126|Cadherin
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    29   4.9  
At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00...    29   4.9  
At3g56370.1 68416.m06269 leucine-rich repeat transmembrane prote...    29   4.9  
At3g15050.1 68416.m01904 calmodulin-binding family protein simil...    29   6.5  
At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si...    29   8.5  
At5g49290.1 68418.m06100 leucine-rich repeat family protein cont...    29   8.5  
At1g33950.1 68414.m04208 avirulence-responsive family protein / ...    29   8.5  

>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 254 NSLTAFLPRTVQKMCKVQFLDVSDPRF 280
           NSLT  LPR + ++ ++ +LD+SD  F
Sbjct: 123 NSLTGLLPRLLSELPQLLYLDLSDNHF 149


>At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 461

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 252 FVNSLTAFLPRTVQKMCKVQFLDVSDPRFLIENSQGDLVAADDVCIQEPMWKVSILFT 309
           F   +T  +   V K  K  FLD+S+PR++  N    L     + + E  +K++ L T
Sbjct: 103 FEEGVTTLIEFAVSKNVKHLFLDLSEPRWVTNNDAAQL-EPGLIKLPESFYKITSLVT 159


>At3g56370.1 68416.m06269 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           kinase - Malus domestica, EMBL:AF053127
          Length = 964

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 227 ISETYASFAIPTTDRWQGICLKQSQFVNSLTAFLPRTVQKMCKVQFLDVSDPRF--LIEN 284
           +SE   S ++P T +   +C   +   N+L   +P+ + +M  ++ LD+S  +F   + +
Sbjct: 246 LSENSLSGSLPNTFQQLSLCYSLNLGKNALEGEVPKWIGEMRSLETLDLSMNKFSGQVPD 305

Query: 285 SQGDLVA 291
           S G+L+A
Sbjct: 306 SIGNLLA 312


>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 259

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 141 AALQYEDSYTIRDKREVVYQESIDWRLLEAEELVSSQYNVLSTAYPWS 188
           A +Q ++  T++ +R + Y  S  WR    + L  + +N+   ++ WS
Sbjct: 155 AKIQQKEEATVKRERAMAYAFSHQWRANATQYLGQASFNLGKESWGWS 202


>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
           similar to OpdB [Treponema denticola] GI:13786054;
           contains Pfam profiles PF00326: prolyl oligopeptidase
           family, PF02897: Prolyl oligopeptidase, N-terminal
           beta-propeller domain
          Length = 792

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 102 RDIDYYSLPIRILVTGEDCSRRHAD 126
           +D DY+ L +R L +G  CS+ HAD
Sbjct: 205 KDNDYFKLCVRNLNSGALCSKPHAD 229


>At5g49290.1 68418.m06100 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 888

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 254 NSLTAFLPRTVQKMCKVQFLDVSD 277
           NSLT ++P T+ +  K++ LD+SD
Sbjct: 591 NSLTGYIPSTLCEFSKMRLLDLSD 614


>At1g33950.1 68414.m04208 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 (Arabidopsis thaliana), NTGP4
           GB:AAD09518 (Nicotiana tabacum); contains Pfam profile:
           PF00735 cell division protein (members of this family
           bind GTP)
          Length = 311

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 313 DQTYIVDSDHRLKIVYHHKELNDTDIAKRVKRELRNQS 350
           D TY +  +   K+  HH+EL   + ++    E++NQS
Sbjct: 215 DDTYHMIKEESEKLRKHHEELESKNYSEECAAEMKNQS 252


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,590,871
Number of Sequences: 28952
Number of extensions: 437782
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 8
length of query: 460
length of database: 12,070,560
effective HSP length: 84
effective length of query: 376
effective length of database: 9,638,592
effective search space: 3624110592
effective search space used: 3624110592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)