Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000465-TA|BGIBMGA000465-PA|undefined
(639 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 36 0.088
Z93385-5|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 35 0.15
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p... 32 1.4
Z68298-7|CAA92604.1| 447|Caenorhabditis elegans Hypothetical pr... 32 1.4
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 32 1.4
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 31 3.3
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 31 3.3
AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical ... 30 4.4
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 29 7.6
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 29 7.6
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 7.6
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 7.6
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 7.6
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 7.6
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 35.9 bits (79), Expect = 0.088
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 409 RRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
R++K +R+ E R+K++RK +K L+K RK+K+
Sbjct: 157 RKEKERRKKEKREKKKRKEKKRLEKENRKIKE 188
>Z93385-5|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 35.1 bits (77), Expect = 0.15
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 409 RRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
R++K +R+ E R+K+ RK +K L+K RK+K+
Sbjct: 157 RKEKERRKKEKREKKERKEKKRLEKENRKIKE 188
>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
protein F26E4.10 protein.
Length = 1086
Score = 31.9 bits (69), Expect = 1.4
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 59 DTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQL 96
D + S ++ + HK +ARR ++ +Y +RHK+ + QL
Sbjct: 3 DEKISMTLNFPKHK-RARRKKYQKEYQERHKEEMMQQL 39
>Z68298-7|CAA92604.1| 447|Caenorhabditis elegans Hypothetical
protein F44D12.8 protein.
Length = 447
Score = 31.9 bits (69), Expect = 1.4
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 35 DPYECDKRIRLRRKMQSVSS-NTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYV 93
DP + R + + QS+S+ NT T S + K ++ H+ R ++S
Sbjct: 103 DPPKTTVRKKKNQVNQSLSAENTNAKTSSDNDERAGSKNDKPKKKNSHTSSDSRRRRSSA 162
Query: 94 NQLVKSVSEKIPHRQAVRIGSNFSFNIEFYKDVPSEQGYRRDDIKTKDRTQSEAKVKKSP 153
+ S K + + + + N F+K V S++ +R D +R +++ S
Sbjct: 163 E--IPSSGSKEDEKSGQKFNKDLAKN--FFKHVQSQRAQKRSDDARLERMPESSQLNASA 218
Query: 154 AGVQGK 159
++ K
Sbjct: 219 RAMRKK 224
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 41 KRIRLRRKMQSVSSNTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKSV 100
KR RL + + SV+S RDT+++ S K + S + P HK+S L +
Sbjct: 729 KRPRLLQMLSSVTSRESRDTQTAPSTPLQQPKPLSHSSSMNGFNPPVHKRSLSQSLADTA 788
Query: 101 S 101
+
Sbjct: 789 A 789
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 30.7 bits (66), Expect = 3.3
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 40 DKRIRLRRKMQSVS-SNTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVK 98
D + R RRK + S S +RD+ SS+S+ + RR + K + ++S + +
Sbjct: 485 DHKDRTRRKDRHDSRSRRRRDSSSSSSMSSSSSDEDERRRKRREKESSKKRRSVEKERPR 544
Query: 99 SVSEKIPHRQAVRIGSNFSFNIEFY-----KDVPSEQGYRRD--DIKTKDRTQSEAKVKK 151
E R R + + KD+ + +RRD D + KDR + + + K+
Sbjct: 545 RADEHRRDRDRDRERDRDRSHRDVRSSGRSKDIKASSSHRRDRDDARRKDRRRDDVRKKE 604
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 30.7 bits (66), Expect = 3.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRI 435
D + +K +RE+E +KRR K+EK + R+
Sbjct: 492 DAEKEERKMRREEEKERKRREKNEKKRNNRM 522
>AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical
protein F49H12.5 protein.
Length = 257
Score = 30.3 bits (65), Expect = 4.4
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 120 IEFYKDVPSEQGYRRDDIKTKDRTQSEAKVKKSPAGVQGKGHLDKICTQEGLEFKSGDGK 179
+EF D +G + + K + + +++ + KK + K +E E K D K
Sbjct: 154 LEFGTDEEPAKGEVKSEKKEEKKEEAKKEEKKVEKKEEKKDKKKDEKKEEKKE-KKEDKK 212
Query: 180 PVQISRAVLKLYRHDSTLQSRKDFLDVEDQKENKLNKNTQANKKNKM 226
+ + K + D + +KD D +D+KE K +K ++ NKK ++
Sbjct: 213 KDEKKKDKKKEDKKDK--KDKKDKKDKKDKKEKKDDKKSKKNKKEEL 257
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 407 DNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKDT 441
+ R + +R D+ R+KR RK K L KR R+ +D+
Sbjct: 525 ERRERDQRRRDKKREKRERKKAK-LGKRKRRHRDS 558
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
D D KK REDE ++RR + E KR+++ K+
Sbjct: 1260 DKDKEHKKKSREDETEEERRARKEA---KRLKRQKE 1292
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
DLD++ +K + DE +++ R+K +K L++ KL +
Sbjct: 928 DLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLME 963
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
DLD++ +K + DE +++ R+K +K L++ KL +
Sbjct: 928 DLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLME 963
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
DLD++ +K + DE +++ R+K +K L++ KL +
Sbjct: 688 DLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLME 723
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
DLD++ +K + DE +++ R+K +K L++ KL +
Sbjct: 928 DLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLME 963
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.133 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,302
Number of Sequences: 27539
Number of extensions: 498751
Number of successful extensions: 2193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2154
Number of HSP's gapped (non-prelim): 51
length of query: 639
length of database: 12,573,161
effective HSP length: 86
effective length of query: 553
effective length of database: 10,204,807
effective search space: 5643258271
effective search space used: 5643258271
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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