GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000465-TA|BGIBMGA000465-PA|undefined
         (639 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   1.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    25   1.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   8.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 205 DVEDQKENKLNKNTQANKKNKMVKFSID 232
           ++ED+ ++K  KN  + KK +    S+D
Sbjct: 220 EIEDEPDHKWKKNDSSKKKTRYYYRSVD 247



 Score = 22.6 bits (46), Expect = 8.5
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 7   KTKKFKQPPI-YNLEPYE--CEPGVCIPGQCDPYECDKRIRLRRKMQSVSSNTQRDT 60
           K   F  P I +NL+     CE  +    +   +  DK + LR++ +++ S  QR++
Sbjct: 308 KCSNFTLPEIQHNLDVLVDMCEQDIIRIDRNTRFNQDKIVALRQEQETLKSQVQRES 364


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 311 VNPGNKTGDENDMKPGEKSQRIKKKGI 337
           +  G  TG+E+D   G+K+Q  KK+GI
Sbjct: 160 IGSGEGTGEEDDDTNGKKNQ--KKRGI 184


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 311 VNPGNKTGDENDMKPGEKSQRIKKKGI 337
           +  G  TG+E+D   G+K+Q  KK+GI
Sbjct: 316 IGSGEGTGEEDDDTNGKKNQ--KKRGI 340


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 198 QSRKDFLDVEDQKENKLNKNTQANKKNKM 226
           Q RK     ED+ +N  +KNT   + NK+
Sbjct: 330 QLRKYLCKNEDETKNHYSKNTYNEQGNKL 358


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 198 QSRKDFLDVEDQKENKLNKNTQANKKNKM 226
           Q RK     ED+ +N  +KNT   + NK+
Sbjct: 222 QLRKYLCKNEDETKNHYSKNTYNEQGNKL 250


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 124 KDVPSEQGYRRDDIKTKDRTQSEAKV 149
           +DV  E GY+    +TK R   E ++
Sbjct: 188 RDVGPEDGYKSYQCRTKHRLTGETRL 213


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,902
Number of Sequences: 317
Number of extensions: 4595
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 639
length of database: 114,650
effective HSP length: 61
effective length of query: 578
effective length of database: 95,313
effective search space: 55090914
effective search space used: 55090914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)