Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000465-TA|BGIBMGA000465-PA|undefined
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 30 0.86
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 29 2.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 2.6
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 29 2.6
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 28 3.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 8.0
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 27 8.0
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 8.0
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 27 8.0
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 30.3 bits (65), Expect = 0.86
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 48 KMQSVSSNTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQ-SYVNQLVKSVSEKIPH 106
++QS+ NT +VQ N K R +++HSKY Y +L + E +
Sbjct: 57 QLQSIQVNTDN---GKVAVQSNGVSTKLRMAKYHSKYSALSSVFRYAGRLCGTFEEDLVD 113
Query: 107 RQA-VRIGSNFSFNIEFYKDVPSEQGYRRDDIKTKDRTQSEAKVKK 151
+ + S ++ K E R K K++ + + K+KK
Sbjct: 114 KSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 407 DNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
DN KK KRE E +++R+K + L + +K+K+
Sbjct: 89 DNEAKKMKREKEILRQQRQKRKSELTQLSQKVKE 122
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 44 RLRRKMQSVSSNT--QRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKSVS 101
R++ K+ S S+N Q + S ASV + K A+R++ K K+ KQS +
Sbjct: 21 RVQEKLDSKSTNAVEQNNNSSQASVTKDNKKKAAKRAK--KKAAKKKKQSAAASASSTPV 78
Query: 102 EKIPHRQ 108
E+ H Q
Sbjct: 79 EEAQHAQ 85
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 143 TQSEAKVKKSPAGVQGKG--HLDKICTQEGLEFKSGD 177
T+ + +V++ GVQG+ HL+ + +EG+E S D
Sbjct: 485 TKQQEEVREKSRGVQGESAAHLENVDGEEGIEDSSND 521
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 411 KKYKREDEARQKRRRKSEKYLDKRIR 436
K YK +D+ ++++R+K +K + K+ R
Sbjct: 425 KMYKNDDDTKKRKRKKKKKEVKKKAR 450
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 407 DNRRKKYKREDEARQKRRRKSEKYLDKR 434
+ R K+Y R++ + KRR K +K + +R
Sbjct: 284 ERRNKRYTRKEMEQMKRRTKEKKEMKRR 311
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 457 LGFSVAQDVGRSTCRAITDPCYTYDSVKSTLKHP 490
L F+ D C ITDP + S+K ++HP
Sbjct: 473 LEFNWRDDAWDFVCHCITDPKDRFCSLKQVMQHP 506
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 181 VQISRAVLKLYRHDSTLQSRKDFLDV 206
+ +S+ +L+ Y+H+S LQS K LD+
Sbjct: 514 MNLSQELLQEYKHNSALQSAKPALDL 539
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 27.1 bits (57), Expect = 8.0
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 3 EKGTKTKKFKQP-PIYNLEPYECEPGVCIPGQCDPYECDKRIRLRRKMQSVSSNTQRDTR 61
EK K + Q I +E EP V + + +++L K + +S N + +R
Sbjct: 131 EKSEKPLETSQKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKEEKISRNLRSSSR 190
Query: 62 SSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKSVS 101
S + V P K + K K+S + +SVS
Sbjct: 191 SISPVTEQPQSPKIQPVIPEKKEKSEKKESSMTLRKRSVS 230
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,244
Number of Sequences: 5004
Number of extensions: 87735
Number of successful extensions: 346
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 14
length of query: 639
length of database: 2,362,478
effective HSP length: 77
effective length of query: 562
effective length of database: 1,977,170
effective search space: 1111169540
effective search space used: 1111169540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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