Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000465-TA|BGIBMGA000465-PA|undefined
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 34 0.30
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 33 0.53
07_01_0463 + 3502708-3503535 31 2.1
12_01_0324 - 2467104-2468633 31 2.8
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 31 2.8
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 31 2.8
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 31 2.8
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 30 4.9
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 30 6.5
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 30 6.5
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 29 8.6
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 34.3 bits (75), Expect = 0.30
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 11/190 (5%)
Query: 40 DKRIRLRRKMQSVSSNTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKS 99
D + R + S + + S + K R S+ S+ + Y ++L
Sbjct: 418 DDKPRRKAPKDKYSDGPESGSDSDHGGKSKYSKISRRDSELQSRKDADKQDQYRDKLKSE 477
Query: 100 -VSEKIPHRQAVRIGSNFSFNIEFYKDVPSEQGYRRDDIKTKDRTQSEAKVKKSPAGVQG 158
S+ +++V+I N + D PS + R+D + T SE VKK +
Sbjct: 478 FASDGYGEKKSVKIPYN-----DLKDDKPSSKVVRKDRYSDESETDSETYVKKKKNLPKS 532
Query: 159 KGHLDKICTQEGLEFKSGDGKPVQISRAVLKLYRHDSTLQSRKDFLD----VEDQKENKL 214
H DK Q G E + GK V + DS + RK LD + QK+ +
Sbjct: 533 YHHSDK-PAQRGKEKEENSGKNVDKRKRHDTDSDSDSHARERKRHLDARASLAAQKKRSV 591
Query: 215 NKNTQANKKN 224
++++++ +
Sbjct: 592 TSSSESSESS 601
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 33.5 bits (73), Expect = 0.53
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Query: 4 KGTKTKKFKQPPIYNLEPYECEPGVCIPGQCDPYECDKRIRLRRKMQSVSSN--TQRDTR 61
+GT T + EPY CEP +P E D +++ + + + +N +R T
Sbjct: 387 RGTATDALNSE-FFRTEPYACEPS-SLPRYPPCKEIDVKLKYEKHKRKLRANGSVERQTT 444
Query: 62 SSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKSVS-EKIPHRQAVRIGSNFSFNI 120
+ + NP RR K + + +LV S S K+ + ++ F++
Sbjct: 445 ARKPMSQNP----GRRVFTPDVNNKPQAKPNIPRLVTSTSTTKLERFPPPHLDASIGFSL 500
Query: 121 EFYKDVPSEQGYRRDDIKTK 140
+ DV +EQ + ++ K
Sbjct: 501 DSSADVSTEQFFTSSVVELK 520
>07_01_0463 + 3502708-3503535
Length = 275
Score = 31.5 bits (68), Expect = 2.1
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 137 IKTKDRTQSEAKVKKSPAGVQGKGHLDKICTQEGLEFKSGDGKPVQISRAVLKLYRHDST 196
IK+KD++ + KK ++ K KI +E ++ S DG + K + +
Sbjct: 32 IKSKDKSSGDEDEKKE-IEIEVKA---KIVDKEEVKLDSDDGAKSAVKSKDSKKDKENKK 87
Query: 197 LQSRKDFLDVEDQKENKLNKNTQANKKNKMVK 228
+ D D ED++ K K + KK+K K
Sbjct: 88 SDKKDDEHDDEDEEGKKKEKEMKEKKKDKSDK 119
>12_01_0324 - 2467104-2468633
Length = 509
Score = 31.1 bits (67), Expect = 2.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 478 YTYDSVKSTLKHPTRIWPIIKNAILNSGAVATLKRVFRRFQAMETV 523
Y Y V ++ R+ P++ NA +SGAV L+ VFRRF A +T+
Sbjct: 147 YAYKIVAQEVE--ARLMPVLANAA-DSGAVVDLQDVFRRF-AFDTI 188
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 31.1 bits (67), Expect = 2.8
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 100 VSEKIPHRQAVRIGSNFSFNIEFYKDVPSEQGYRRDDIKTKDRTQSEAKVKKSPAGVQGK 159
VS K+ R A R+G +E Y D+ + + ++KD +Q + + PAG+ K
Sbjct: 226 VSSKVSKRSANRVGFLPHGIVEPYSDMELKPLWLTRSAQSKDSSQKDRCLLAIPAGIDQK 285
Query: 160 GHLDKI 165
+D I
Sbjct: 286 RSVDAI 291
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 31.1 bits (67), Expect = 2.8
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 41 KRIRLRRKMQSVSSNTQRDTRSSASVQYNPHK----HKARRSQFHSKYPKRHKQSYVNQL 96
KR RL S S + ++ S+A + P K ++R ++ H+ +R ++ +N+
Sbjct: 279 KRKRLDTTEDSESPSEDAESESAALARKPPAKMTTARRSRAAEVHN-LSERRRRDRINEK 337
Query: 97 VKSVSEKIPHRQAVRIGSNFSFNIEFYKDV 126
++++ E IPH S IE+ K +
Sbjct: 338 MRALQELIPHCNKTDKASMLDEAIEYLKSL 367
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 31.1 bits (67), Expect = 2.8
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 582 LSVYYTCPWFYPHFMTMLNAIRQITDLLLFLLAAFVWSPCILCTELCRAMLCCFVCT 638
L V+ TC WF P ++ + +L + + + C++C ++ A C+ C+
Sbjct: 649 LWVHVTCAWFQPKVSFPVDETMEPAMGILSIPSEYFKKACVICKQMHGACTQCYKCS 705
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 30.3 bits (65), Expect = 4.9
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 409 RRKKYKREDEARQKRRRKSEKYLDKRIRKLKDTXXXXXXXXXXXXXXKLGFSVAQDVGRS 468
++KK + E E QKRR K L K++ K KL +D G
Sbjct: 408 QQKKQQEEAEKEQKRREKEAVQLKKQLAIQKQASMMERFFKNKKDSEKLEKPGGKDSGVQ 467
Query: 469 TCRAITDPCYTYDSV 483
T TDPC T V
Sbjct: 468 T----TDPCTTNKEV 478
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 29.9 bits (64), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 166 CTQEGLEFKSGDGKPVQISRAVLKLYRHDSTLQSRKDFLDVEDQKENKL 214
CT+E L F D +QIS++ D+ L + ++ + +D EN+L
Sbjct: 523 CTKEALRFNKIDIGQIQISKSESNTNMFDAKLHALQNIGNCDDVMENRL 571
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 29.9 bits (64), Expect = 6.5
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 172 EFKSGDGKPVQISRAVLKLYRHDSTLQSRKDFLDVEDQKENKLNKNTQANKKNKMV 227
E GK I L++ + +TL+ R D L D ++++ KNTQA K +K++
Sbjct: 314 EIAKRKGKDEHIGSQSLEMLKVRATLEERSD-LQTLDDFDDEVLKNTQAIKPSKVL 368
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 29.5 bits (63), Expect = 8.6
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 409 RRKKYKREDEARQKRRRKSEKYLDKRIRKLKDT 441
R ++++RE E R++ RRK +K +RIR+L +T
Sbjct: 64 REEQFRREVELRREERRKVKKE-KRRIRRLMET 95
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,690
Number of Sequences: 37544
Number of extensions: 507019
Number of successful extensions: 1350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 18
length of query: 639
length of database: 14,793,348
effective HSP length: 87
effective length of query: 552
effective length of database: 11,527,020
effective search space: 6362915040
effective search space used: 6362915040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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