GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000465-TA|BGIBMGA000465-PA|undefined
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.30 
SB_56836| Best HMM Match : GAF (HMM E-Value=2.8e-07)                   32   1.2  
SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.8  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.9  
SB_59065| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=7.6)           30   6.5  

>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 34.3 bits (75), Expect = 0.30
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 19/171 (11%)

Query: 61  RSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKSVSEKIPHRQAVRIGSNFSFNI 120
           + +A +   P++ K+ +S F S+ PK           +S   + P   +  I  + S   
Sbjct: 685 QETAGLDLPPNQSKSIKSFFQSRSPKS----------RSPESRSPESDSSPIRESPSQES 734

Query: 121 EFYKDVPSEQGYRRDDIKTKDRTQSEAKVKKSPAGVQGKGHLDKICTQEGLEFKSGDGKP 180
           +  KD PSE+   +DD   +++     +++ S    + K  + K   +  L ++  +   
Sbjct: 735 KDSKDAPSERDTAQDDAVLEEKLDGMTRLQGSGNKSEEKS-IKKTKQKWSLTWRVANKSK 793

Query: 181 VQISRAVLKLYRHDSTLQSRKDFLDVEDQKE---NKLNKNTQANKKNKMVK 228
              +      +  DS        L++ED  E   NK NKNT+A KK K+ K
Sbjct: 794 QNTTTTPDSDFEEDSL-----PTLELEDNDEKNFNKDNKNTKAKKKGKVGK 839


>SB_56836| Best HMM Match : GAF (HMM E-Value=2.8e-07)
          Length = 552

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 97  VKSVSEKIPHRQAVRIGSNFSFNIEFYKDVPSEQGYRRDDIKTKDRTQSEAKVK------ 150
           V S  E I H++ +R+      +  F +DV  + GY    +  K    +E +V+      
Sbjct: 269 VSSAKEAIDHQREIRVPLGVGLDPRFNQDVDKQTGYHTKSLLCKPVKNNEGEVRVVGVAQ 328

Query: 151 ---KSPAGVQGKGHLDKIC 166
              K+P GV      +K+C
Sbjct: 329 IINKNPGGVPFTKEDEKVC 347


>SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 62  SSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKSVS-EKIPHRQAVRI 112
           S AS    P    AR+S+   K PKRH     N L +S S  + P+R +V I
Sbjct: 309 SGASAANGPIAKPARKSKTKEKVPKRHTIHGGNNLEQSSSLSQTPNRHSVEI 360


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 50  QSVSSNTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKSVSEKIPHRQA 109
           +S+S   +R  R      ++P  H+  RS+  S+ P+R ++S   +  +      PH ++
Sbjct: 196 RSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRS 255

Query: 110 VRIGSNFSFNIEFYKDVPSEQGYR-RDDIKTKDRTQSEAKVKKSPAGVQGKGHLDKICTQ 168
            R  S        +    S    R R    + ++ + + K KK     +     D+  T+
Sbjct: 256 HRSRSRSRSPRRRHSRSRSPTHRRHRSRSHSPEKKKHKKKEKKEKDEKRKSRAEDEGLTK 315

Query: 169 EGLEFKSGD 177
           E LE K  +
Sbjct: 316 EQLEIKEAN 324


>SB_59065| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=7.6)
          Length = 247

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 124 KDVPSEQGYRRDDIKTKDRTQSEAKVKKSPAGVQGKGHLDKICTQEGLEFKSGDGKPVQI 183
           KD PSE+   +DD   +++     +++ S    + K  + K   +  L ++  +      
Sbjct: 120 KDAPSERDTAQDDAVLEEKLDGMTRLQGSGNKSEEKS-IKKTKQKWSLTWRVANKSKQNT 178

Query: 184 SRAVLKLYRHDSTLQSRKDFLDVEDQKE---NKLNKNTQANKKNKMVK 228
           +      +  DS        L++ED  E   NK NKNT+A KK K+ K
Sbjct: 179 TTTPDSDFEEDSL-----PTLELEDNDEKNFNKDNKNTKAKKKGKVGK 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,362,849
Number of Sequences: 59808
Number of extensions: 669440
Number of successful extensions: 2847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2842
Number of HSP's gapped (non-prelim): 5
length of query: 639
length of database: 16,821,457
effective HSP length: 87
effective length of query: 552
effective length of database: 11,618,161
effective search space: 6413224872
effective search space used: 6413224872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)