GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000465-TA|BGIBMGA000465-PA|undefined
         (639 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    36   0.088
Z93385-5|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    35   0.15 
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p...    32   1.4  
Z68298-7|CAA92604.1|  447|Caenorhabditis elegans Hypothetical pr...    32   1.4  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    32   1.4  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    31   3.3  
AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical ...    31   3.3  
AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical ...    30   4.4  
Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical pr...    29   7.6  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    29   7.6  
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    29   7.6  
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    29   7.6  
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    29   7.6  
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    29   7.6  

>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 35.9 bits (79), Expect = 0.088
 Identities = 14/32 (43%), Positives = 25/32 (78%)

Query: 409 RRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
           R++K +R+ E R+K++RK +K L+K  RK+K+
Sbjct: 157 RKEKERRKKEKREKKKRKEKKRLEKENRKIKE 188


>Z93385-5|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 14/32 (43%), Positives = 24/32 (75%)

Query: 409 RRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
           R++K +R+ E R+K+ RK +K L+K  RK+K+
Sbjct: 157 RKEKERRKKEKREKKERKEKKRLEKENRKIKE 188


>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
          protein F26E4.10 protein.
          Length = 1086

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 59 DTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQL 96
          D + S ++ +  HK +ARR ++  +Y +RHK+  + QL
Sbjct: 3  DEKISMTLNFPKHK-RARRKKYQKEYQERHKEEMMQQL 39


>Z68298-7|CAA92604.1|  447|Caenorhabditis elegans Hypothetical
           protein F44D12.8 protein.
          Length = 447

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 35  DPYECDKRIRLRRKMQSVSS-NTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYV 93
           DP +   R +  +  QS+S+ NT   T S    +      K ++   H+    R ++S  
Sbjct: 103 DPPKTTVRKKKNQVNQSLSAENTNAKTSSDNDERAGSKNDKPKKKNSHTSSDSRRRRSSA 162

Query: 94  NQLVKSVSEKIPHRQAVRIGSNFSFNIEFYKDVPSEQGYRRDDIKTKDRTQSEAKVKKSP 153
              + S   K   +   +   + + N  F+K V S++  +R D    +R    +++  S 
Sbjct: 163 E--IPSSGSKEDEKSGQKFNKDLAKN--FFKHVQSQRAQKRSDDARLERMPESSQLNASA 218

Query: 154 AGVQGK 159
             ++ K
Sbjct: 219 RAMRKK 224


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 41  KRIRLRRKMQSVSSNTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVKSV 100
           KR RL + + SV+S   RDT+++ S      K  +  S  +   P  HK+S    L  + 
Sbjct: 729 KRPRLLQMLSSVTSRESRDTQTAPSTPLQQPKPLSHSSSMNGFNPPVHKRSLSQSLADTA 788

Query: 101 S 101
           +
Sbjct: 789 A 789


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 40  DKRIRLRRKMQSVS-SNTQRDTRSSASVQYNPHKHKARRSQFHSKYPKRHKQSYVNQLVK 98
           D + R RRK +  S S  +RD+ SS+S+  +      RR +   K   + ++S   +  +
Sbjct: 485 DHKDRTRRKDRHDSRSRRRRDSSSSSSMSSSSSDEDERRRKRREKESSKKRRSVEKERPR 544

Query: 99  SVSEKIPHRQAVRIGSNFSFNIEFY-----KDVPSEQGYRRD--DIKTKDRTQSEAKVKK 151
              E    R   R       + +       KD+ +   +RRD  D + KDR + + + K+
Sbjct: 545 RADEHRRDRDRDRERDRDRSHRDVRSSGRSKDIKASSSHRRDRDDARRKDRRRDDVRKKE 604


>AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical
           protein C07H6.4 protein.
          Length = 933

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRI 435
           D +   +K +RE+E  +KRR K+EK  + R+
Sbjct: 492 DAEKEERKMRREEEKERKRREKNEKKRNNRM 522


>AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical
           protein F49H12.5 protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 120 IEFYKDVPSEQGYRRDDIKTKDRTQSEAKVKKSPAGVQGKGHLDKICTQEGLEFKSGDGK 179
           +EF  D    +G  + + K + + +++ + KK     + K        +E  E K  D K
Sbjct: 154 LEFGTDEEPAKGEVKSEKKEEKKEEAKKEEKKVEKKEEKKDKKKDEKKEEKKE-KKEDKK 212

Query: 180 PVQISRAVLKLYRHDSTLQSRKDFLDVEDQKENKLNKNTQANKKNKM 226
             +  +   K  + D   + +KD  D +D+KE K +K ++ NKK ++
Sbjct: 213 KDEKKKDKKKEDKKDK--KDKKDKKDKKDKKEKKDDKKSKKNKKEEL 257


>Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical
           protein K07C5.6 protein.
          Length = 647

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 407 DNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKDT 441
           + R +  +R D+ R+KR RK  K L KR R+ +D+
Sbjct: 525 ERRERDQRRRDKKREKRERKKAK-LGKRKRRHRDS 558


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
            protein C52B9.8 protein.
          Length = 1336

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 405  DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
            D D   KK  REDE  ++RR + E    KR+++ K+
Sbjct: 1260 DKDKEHKKKSREDETEEERRARKEA---KRLKRQKE 1292


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
           protein F35D11.11a protein.
          Length = 1840

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
           DLD++ +K +  DE +++ R+K +K L++   KL +
Sbjct: 928 DLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLME 963


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
           protein F35D11.11c protein.
          Length = 1898

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
           DLD++ +K +  DE +++ R+K +K L++   KL +
Sbjct: 928 DLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLME 963


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
           protein F35D11.11d protein.
          Length = 1671

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
           DLD++ +K +  DE +++ R+K +K L++   KL +
Sbjct: 688 DLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLME 723


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
           protein F35D11.11b protein.
          Length = 1911

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 405 DLDNRRKKYKREDEARQKRRRKSEKYLDKRIRKLKD 440
           DLD++ +K +  DE +++ R+K +K L++   KL +
Sbjct: 928 DLDDKLRKMELTDEEKEEDRKKEQKTLNEERMKLME 963


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,302
Number of Sequences: 27539
Number of extensions: 498751
Number of successful extensions: 2193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2154
Number of HSP's gapped (non-prelim): 51
length of query: 639
length of database: 12,573,161
effective HSP length: 86
effective length of query: 553
effective length of database: 10,204,807
effective search space: 5643258271
effective search space used: 5643258271
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)