Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000464-TA|BGIBMGA000464-PA|IPR007209|Possible
metal-binding region in RNase L inhibitor, RLI, IPR007177|Protein of
unknown function DUF367
         (240 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    27   0.17 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   4.9  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.5  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 173 SEAKFYLSKFSWGHSFLELNSDALDLYAVCTDSKSVLEAQAT--FLESV---KNEQDDRP 227
           SE  FY  +  WG SF +      D  AV T SKS++    T  FL+++   +N  D   
Sbjct: 124 SEDTFYDIRL-WGVSFSKKQILRSDDLAVKTTSKSLVPTPVTHIFLQNLILKENTYDAVI 182

Query: 228 MWPPSESDS 236
            W P+E  S
Sbjct: 183 KWSPNEDYS 191


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 152 KPYQLSCVEALAAAMFITGHKSEAKFYLSKFSW 184
           KP  + C+  LA  +F+    ++    +  F W
Sbjct: 3   KPILVLCLATLALGLFVPHFAADRNSIVHLFEW 35


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 46  EGIKATFSVSMWDLNHCDPKK 66
           + + A  S++ W L+  DP+K
Sbjct: 229 DNLNANSSITHWILSGADPQK 249


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,963
Number of Sequences: 317
Number of extensions: 2169
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 240
length of database: 114,650
effective HSP length: 55
effective length of query: 185
effective length of database: 97,215
effective search space: 17984775
effective search space used: 17984775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)