Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000464-TA|BGIBMGA000464-PA|IPR007209|Possible
metal-binding region in RNase L inhibitor, RLI, IPR007177|Protein of
unknown function DUF367
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...   196   3e-51
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   1.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.3  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   7.4  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score =  196 bits (477), Expect = 3e-51
 Identities = 79/172 (45%), Positives = 122/172 (70%)

Query: 49  KATFSVSMWDLNHCDPKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKNII 108
           K    ++MWD  HC+P  CSG++L R   ++NL++G +F+G+V++P G   VSP DK   
Sbjct: 24  KFPLPLAMWDFGHCNPNACSGKRLERLGCVRNLRIGQKFRGVVITPNGKVPVSPADKEYF 83

Query: 109 ETFGLAVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFI 168
           +  G +V++CSWA+I+E PFSR+     RLLP+LVA+NP+NYG+P++L+C EALAA M+I
Sbjct: 84  DNGGASVVECSWARIEEIPFSRIGGRCERLLPYLVASNPVNYGRPWRLNCAEALAACMYI 143

Query: 169 TGHKSEAKFYLSKFSWGHSFLELNSDALDLYAVCTDSKSVLEAQATFLESVK 220
            G+ +EA+  +  F WGHSF E+N + LD+YA C D++ + E +  +LE ++
Sbjct: 144 VGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEME 195


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 176 KFYLSKFSWGHSFLELNSDALDLYAVCT 203
           K  L+ F W  +F   N+ A+D YA CT
Sbjct: 486 KILLNNFDW--NFFNYNNSAIDSYAKCT 511


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 102  PNDKNIIETFGLAVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEA 161
            P D+  I+   + + +C +   +   FS+   P+     FL+A   + YG P     V  
Sbjct: 949  PLDRKRIDAISVILSECGFVLFN---FSQ---PYYYYFSFLLAEMYLRYGNPSLRYSVMF 1002

Query: 162  LAAAMFITGHKSEAKFYLSK 181
            LA+  F+T  K E    +S+
Sbjct: 1003 LASYCFVTRRKPEFLLRISQ 1022


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 184  WG-HSFLELNSDALDLYAVCTDSKSVLEAQATFLESVKNEQDDRPMWPPSESDSA 237
            WG ++ L  N    +L A C      L+A  T+  S   +   R +W  S +DSA
Sbjct: 2990 WGRYNDLLFNKSPDNLSAACNAISCYLQAAGTYQSSKARKMLARVLWLLSLNDSA 3044


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 203  TDSKSVLEAQATFLESVKNEQDDRPMWPPSESDSASD 239
            TD  +V +  A   E  ++E+D+ P    S+SD   D
Sbjct: 1378 TDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDD 1414


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,091,014
Number of Sequences: 5004
Number of extensions: 41985
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 5
length of query: 240
length of database: 2,362,478
effective HSP length: 71
effective length of query: 169
effective length of database: 2,007,194
effective search space: 339215786
effective search space used: 339215786
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)