Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000464-TA|BGIBMGA000464-PA|IPR007209|Possible
metal-binding region in RNase L inhibitor, RLI, IPR007177|Protein of
unknown function DUF367
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53876| Best HMM Match : DUF367 (HMM E-Value=0)                     223   1e-58
SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)                   28   6.0  
SB_55749| Best HMM Match : SRCR (HMM E-Value=0)                        28   7.9  

>SB_53876| Best HMM Match : DUF367 (HMM E-Value=0)
          Length = 175

 Score =  223 bits (545), Expect = 1e-58
 Identities = 97/166 (58%), Positives = 124/166 (74%)

Query: 58  DLNHCDPKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKNIIETFGLAVID 117
           DL HCDPKKCSG+KL R   ++ L+L H F GLVLSPVGTQCVSP D+ I+E+ G+AVID
Sbjct: 1   DLEHCDPKKCSGKKLARLGFVQTLRLSHSFTGLVLSPVGTQCVSPGDRGIVESHGIAVID 60

Query: 118 CSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKF 177
           CSWAK++ TPF RM+   PRLLP+LVAANPINYG+P +LSCVEA AA ++ITG +    F
Sbjct: 61  CSWAKLEGTPFKRMRGSFPRLLPYLVAANPINYGRPCKLSCVEAYAATLYITGFEELGLF 120

Query: 178 YLSKFSWGHSFLELNSDALDLYAVCTDSKSVLEAQATFLESVKNEQ 223
            L +F WG +F +LN + L+LYA C +SK V+E Q  +L+    E+
Sbjct: 121 ILKRFKWGPTFYDLNRELLELYAACKNSKEVVEVQQNWLDKCDKER 166


>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
          Length = 628

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 104 DKNIIETFGLAVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKP-YQLSCVEAL 162
           D ++  TF LA  D   AK D+  F  M +   R+   +V   PI Y    + +  V  L
Sbjct: 490 DDDVGSTFSLADKDTKNAKDDKIIFRNMPTISSRVPAKIVVRVPIRYPHDIFNVGSVLFL 549

Query: 163 AAAMFITGHKSEAKFYLSKFSWGHSFLELNSDA-LDLY 199
                +      +  Y   F +G    E  S   LDLY
Sbjct: 550 YKCCVLRITNKRSTIYADYFLYGSKLEERESHPYLDLY 587


>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1224

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 126 TPFSRMKSPHPRLLPFLVAANPINYGKPY 154
           +PF+++ +P     PF  AANP   G P+
Sbjct: 200 SPFAKVANPSSLGSPFAKAANPSRLGSPF 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,979,844
Number of Sequences: 59808
Number of extensions: 296383
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 13
length of query: 240
length of database: 16,821,457
effective HSP length: 80
effective length of query: 160
effective length of database: 12,036,817
effective search space: 1925890720
effective search space used: 1925890720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)