GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000464-TA|BGIBMGA000464-PA|IPR007209|Possible
metal-binding region in RNase L inhibitor, RLI, IPR007177|Protein of
unknown function DUF367
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491...   192   2e-49
07_01_1088 + 9995442-9997736                                           31   0.83 
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   5.9  

>03_02_0011 -
           4909292-4909434,4909520-4909626,4910100-4910171,
           4910713-4910803,4911136-4911272,4911377-4911417,
           4911681-4911746,4912756-4913082
          Length = 327

 Score =  192 bits (468), Expect = 2e-49
 Identities = 83/164 (50%), Positives = 116/164 (70%)

Query: 58  DLNHCDPKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKNIIETFGLAVID 117
           D   CD K+C+GRKL R  L+K L++ + F G+VLSPVGTQCVS  D++I++  GLAV+D
Sbjct: 110 DFGQCDVKRCTGRKLSRFGLLKELRVTNGFGGVVLSPVGTQCVSKEDRHIVQRKGLAVVD 169

Query: 118 CSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKF 177
           CSWA++ + PF +++   PRLLP+LVAANP+NYG+P +LSCVEAL+AA+ I G +  A  
Sbjct: 170 CSWARLSDVPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETAHL 229

Query: 178 YLSKFSWGHSFLELNSDALDLYAVCTDSKSVLEAQATFLESVKN 221
            L KF WGHSFL +N + L  Y+ C +   ++  Q ++L S  N
Sbjct: 230 LLGKFKWGHSFLSVNRELLKAYSQCENGTEIINVQNSWLSSNSN 273


>07_01_1088 + 9995442-9997736
          Length = 764

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 166 MFITG--HKSEAKFYLSKFSWGHSFLELNSDALDLYAVCT 203
           +FIT   HK   + YL  F W   F+ L SDAL +YA+ T
Sbjct: 29  LFITASRHKFPIRSYLRSFIW---FVYLGSDALAIYALAT 65


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 123 IDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAA 165
           +D+    R  SP     PF+ AA    Y  P Q+ C  A AAA
Sbjct: 183 LDDAAHHRKPSP-----PFVAAAAAAAYASPDQMECTSAAAAA 220


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,917,047
Number of Sequences: 37544
Number of extensions: 259838
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 3
length of query: 240
length of database: 14,793,348
effective HSP length: 80
effective length of query: 160
effective length of database: 11,789,828
effective search space: 1886372480
effective search space used: 1886372480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)