GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000464-TA|BGIBMGA000464-PA|IPR007209|Possible
metal-binding region in RNase L inhibitor, RLI, IPR007177|Protein of
unknown function DUF367
         (240 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    24   3.5  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    24   3.5  
AY146723-1|AAO12083.1|  155|Anopheles gambiae odorant-binding pr...    23   6.1  
AF437884-1|AAL84179.1|  144|Anopheles gambiae odorant binding pr...    23   6.1  
AY146721-1|AAO12081.1|  144|Anopheles gambiae odorant-binding pr...    23   8.0  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   8.0  

>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 203 TDSKSVLEAQATFLESVKNEQDDRPMWPPSESDSAS 238
           +DS S  ++ ++   S  +E D+   +  SESDS S
Sbjct: 451 SDSSSSDDSSSSSSSSSSSESDEHDFYSSSESDSDS 486


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 203 TDSKSVLEAQATFLESVKNEQDDRPMWPPSESDSAS 238
           +DS S  ++ ++   S  +E D+   +  SESDS S
Sbjct: 451 SDSSSSDDSSSSSSSSSSSESDEHDFYSSSESDSDS 486


>AY146723-1|AAO12083.1|  155|Anopheles gambiae odorant-binding
           protein AgamOBP17 protein.
          Length = 155

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 110 TFGLAV-IDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGK 152
           TF  AV + CS    D TP    + P P LL  L   + I  GK
Sbjct: 5   TFVFAVLVCCSMTLGDTTPRRDAEYPPPELLEALKPLHDICLGK 48


>AF437884-1|AAL84179.1|  144|Anopheles gambiae odorant binding
           protein protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 114 AVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGK 152
           A++ CS    D TP    + P P LL  L   + I  GK
Sbjct: 10  ALVCCSMTLGDTTPRRDAEYPPPELLEALKPLHDICLGK 48


>AY146721-1|AAO12081.1|  144|Anopheles gambiae odorant-binding
           protein AgamOBP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 114 AVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGK 152
           A++ CS    D TP    + P P LL  L   + I  GK
Sbjct: 10  ALLCCSMTLGDTTPRRDAEYPPPELLEALKPLHDICLGK 48


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 169 TGHK-SEAKFYLSKFSWGHSFL 189
           TG K  E  FYLS+   GH+F+
Sbjct: 916 TGRKHGEVDFYLSQVLSGHAFV 937


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,042
Number of Sequences: 2123
Number of extensions: 8461
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 516,269
effective HSP length: 62
effective length of query: 178
effective length of database: 384,643
effective search space: 68466454
effective search space used: 68466454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)