GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000464-TA|BGIBMGA000464-PA|IPR007209|Possible
metal-binding region in RNase L inhibitor, RLI, IPR007177|Protein of
unknown function DUF367
         (240 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100657-4|AAK70655.2|  261|Caenorhabditis elegans Hypothetical ...   213   7e-56
AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical ...    31   0.98 
U39997-7|AAA81099.2|  147|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF016668-3|AAO12441.1|  126|Caenorhabditis elegans Hypothetical ...    28   5.2  

>AF100657-4|AAK70655.2|  261|Caenorhabditis elegans Hypothetical
           protein F52C12.2 protein.
          Length = 261

 Score =  213 bits (521), Expect = 7e-56
 Identities = 99/193 (51%), Positives = 130/193 (67%), Gaps = 3/193 (1%)

Query: 46  EGIKATFSVSMWDLNHCDPKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDK 105
           E  K  F ++M+D N CDPK+CSGRKLLR NLI  +KLG RF GLVLSP GT  ++P D+
Sbjct: 55  EDYKFPFRLAMYDFNQCDPKRCSGRKLLRANLITEVKLGQRFPGLVLSPTGTYTLAPRDR 114

Query: 106 NIIETFGLAVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAA 165
             +E  GL V+DCSW +++ TP  R+K+P  RLLP+LVAAN +NYGKP  L+C EA+AA 
Sbjct: 115 PFVEQNGLCVVDCSWKEVERTPLHRVKAPEHRLLPYLVAANSVNYGKPCHLTCAEAMAAG 174

Query: 166 MFITGHKSEAKFYLSKFSWGHSFLELNSDALDLYAVCTDSKSVLEAQATFLESV--KNEQ 223
           ++I G +  A   +  FSWG  F+ELN + LDLYA C   + V+ AQ  +LE +  + EQ
Sbjct: 175 LYILGFQEAASRLMKPFSWGDHFIELNKELLDLYAACDTPEDVIRAQNEYLERIDKEREQ 234

Query: 224 DDRPM-WPPSESD 235
             R +  PPS SD
Sbjct: 235 HSRDIDLPPSGSD 247


>AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical
           protein C03H5.4 protein.
          Length = 160

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 115 VIDCSWAKIDETPFSRMKSPHPRLLPFLV 143
           +++C WAK  E P  ++K PHPRL  FL+
Sbjct: 126 LVEC-WAKYPE-PTGQLKCPHPRLSRFLL 152


>U39997-7|AAA81099.2|  147|Caenorhabditis elegans Hypothetical
           protein F56D1.3 protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 67  CSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKN 106
           C+ R      +  +  LG R++G +L  VGT    PN KN
Sbjct: 22  CTNRPFYHVCVFPDRALGRRYEGNILEQVGTFDPLPNQKN 61


>AF016668-3|AAO12441.1|  126|Caenorhabditis elegans Hypothetical
           protein F36H9.7 protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 141 FLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSK 181
           FL A  P+  G+    SC       + I GHK++  +Y+ K
Sbjct: 26  FLSAPEPMCRGEIRNNSCAPENLGCLSIIGHKADGTYYVEK 66


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,848,590
Number of Sequences: 27539
Number of extensions: 224258
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 4
length of query: 240
length of database: 12,573,161
effective HSP length: 79
effective length of query: 161
effective length of database: 10,397,580
effective search space: 1674010380
effective search space used: 1674010380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)