GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000464-TA|BGIBMGA000464-PA|IPR007209|Possible
metal-binding region in RNase L inhibitor, RLI, IPR007177|Protein of
unknown function DUF367
         (240 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    28   0.088
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           28   0.088
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.3  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 16/62 (25%), Positives = 23/62 (37%)

Query: 163 AAAMFITGHKSEAKFYLSKFSWGHSFLELNSDALDLYAVCTDSKSVLEAQATFLESVKNE 222
           AA M    ++    FY   +   HS  E+ S   + Y VC    + +     FL S    
Sbjct: 424 AARMQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTT 483

Query: 223 QD 224
            D
Sbjct: 484 ND 485


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 16/62 (25%), Positives = 23/62 (37%)

Query: 163 AAAMFITGHKSEAKFYLSKFSWGHSFLELNSDALDLYAVCTDSKSVLEAQATFLESVKNE 222
           AA M    ++    FY   +   HS  E+ S   + Y VC    + +     FL S    
Sbjct: 424 AARMQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTT 483

Query: 223 QD 224
            D
Sbjct: 484 ND 485


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 194  DALDLYAVCTDSKSVLEAQATFLESVKNEQDDRP 227
            D  +LYAV TD KS  +++     S +  Q  +P
Sbjct: 1472 DLHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQP 1505


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 58  DLNHCDPKKCSGRKLLRHNLIKNLKLGHRFQGLVL---SPVGTQCVSPN 103
           D + CD K  S RK++R    ++ +   RF   ++   SP  ++  SP+
Sbjct: 2   DKDECDRKSLSQRKIIRS---RSRRYSKRFSSSIVDRRSPSSSRSPSPS 47


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,027
Number of Sequences: 429
Number of extensions: 2269
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 240
length of database: 140,377
effective HSP length: 56
effective length of query: 184
effective length of database: 116,353
effective search space: 21408952
effective search space used: 21408952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)