Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000463-TA|BGIBMGA000463-PA|undefined
         (114 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18750.1 68415.m02183 calmodulin-binding protein similar to c...    26   7.0  
At1g79190.1 68414.m09233 expressed protein                             26   7.0  
At1g77120.1 68414.m08982 alcohol dehydrogenase (ADH) identical t...    26   7.0  
At5g28840.1 68418.m03547 NAD-dependent epimerase/dehydratase fam...    25   9.2  
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar...    25   9.2  
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar...    25   9.2  

>At2g18750.1 68415.m02183 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 622

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 7   WSAEVYTWGYQIYNDQSVQVFGLDTGSIVVTLAEGLLDEGRCMITDN 53
           WS E +  G+ +   Q  +   L TG + VTL EG+   G  + TDN
Sbjct: 164 WSGEEFE-GHLVKERQGKRP--LLTGDVQVTLKEGVGTLGELIFTDN 207


>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 20  NDQSVQVFGLDTGSIVVTLAEGLLDEGRCMITDNYYTSDPLTE 62
           N  ++++   DT S     A  +LDE R + T +   SD LTE
Sbjct: 322 NSSALEISNGDTKSQKHESAHSILDELRSLTTKSQGQSDELTE 364


>At1g77120.1 68414.m08982 alcohol dehydrogenase (ADH) identical to
          alcohol dehydrogenase GI:469467 from (Arabidopsis
          thaliana)
          Length = 379

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 6  LWSAEVYTWGYQIYNDQSVQVFGLDTGSIVVTLAEGLLD 44
          L   +VY W  +       ++FG + G IV ++ EG+ D
Sbjct: 46 LCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTD 84


>At5g28840.1 68418.m03547 NAD-dependent epimerase/dehydratase
          family protein similar to sugar epimerase BlmG from
          Streptomyces verticillus GI:9937230; contains Pfam
          profile PF01370 NAD dependent epimerase/dehydratase
          family
          Length = 377

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 32 GSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMFARKSHL 71
          G I   +A  L  EG  +I  ++  ++ +TE MF  + HL
Sbjct: 37 GFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHL 76


>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase from Solanum tuberosum
           [SP|p14673]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 352

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 25  QVFGLDTGSIVVTLAEGLLDEGRCMITDNYYTSD-PLTEFMFARKSHLCGTVNKKRRGLP 83
           ++FG +   IV ++ EG+ +  +       +T +        + KS++C  +  +R+GL 
Sbjct: 39  RIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLM 98

Query: 84  KERRREKLSI 93
              ++ + SI
Sbjct: 99  HSDQKTRFSI 108


>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase from Solanum tuberosum
           [SP|p14673]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 381

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 25  QVFGLDTGSIVVTLAEGLLDEGRCMITDNYYTSD-PLTEFMFARKSHLCGTVNKKRRGLP 83
           ++FG +   IV ++ EG+ +  +       +T +        + KS++C  +  +R+GL 
Sbjct: 68  RIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLM 127

Query: 84  KERRREKLSI 93
              ++ + SI
Sbjct: 128 HSDQKTRFSI 137


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,189
Number of Sequences: 28952
Number of extensions: 90491
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 6
length of query: 114
length of database: 12,070,560
effective HSP length: 72
effective length of query: 42
effective length of database: 9,986,016
effective search space: 419412672
effective search space used: 419412672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)