GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000463-TA|BGIBMGA000463-PA|undefined
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    28   0.32 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   0.42 
SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.0  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    23   9.0  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 28.3 bits (60), Expect = 0.32
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 19  YNDQSVQVFGLDTGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEF 63
           Y D+   V G   GSI   + EGLL  G  ++      S  +TEF
Sbjct: 633 YQDKYALVTGAGAGSIGAQIVEGLLAGGAKVVVTTSRFSRKVTEF 677


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 0.42
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 4    SRLWSAEVYTWGYQIYNDQSVQVFGLDTGS 33
            SRLW + V TW Y I +      F L+ G+
Sbjct: 2057 SRLWISRVATWIYSIASGSQALFFSLNFGN 2086


>SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 73

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 8  SAEVYTWGYQIYNDQSVQ 25
          S  ++T GY+IY+D  ++
Sbjct: 33 STAIFTMGYKIYSDPEIR 50


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 96  AHETIVKKTLTARTCTP 112
           +H+T++K+ L  + CTP
Sbjct: 14  SHKTVLKRRLFRKECTP 30


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,962
Number of Sequences: 5004
Number of extensions: 17757
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)