Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000463-TA|BGIBMGA000463-PA|undefined
(114 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 29 1.2
04_03_0448 - 16020773-16021066,16023040-16023291,16023470-160236... 28 1.5
04_03_0150 + 11877714-11878487,11880928-11881245 27 3.6
11_06_0237 - 21606240-21606395,21606499-21606706,21607565-216076... 27 4.7
06_03_0039 + 15791968-15792036,15793317-15793847,15799797-158001... 27 4.7
04_03_0442 - 15967204-15967501,15967954-15968126,15968581-159687... 27 4.7
02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675... 26 6.2
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 26 8.2
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 26 8.2
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 52 DNYYTSDPLTEFMFARKSHLCGTVNKKRRGLP 83
DNY+ S F F+ + LCG+ +K++ LP
Sbjct: 102 DNYFLSSLFLSFQFSVQIALCGSEAQKQKYLP 133
>04_03_0448 -
16020773-16021066,16023040-16023291,16023470-16023605,
16023713-16023937,16024467-16024851,16025142-16025421
Length = 523
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 10 EVYTWGYQIYNDQSVQVFGLDTGSIVVTLAEGLLDE 45
E YTW Y +Y+++ + + IVV +A LLD+
Sbjct: 242 ECYTWSYAVYHEEEMSFARMLFAKIVVIIA--LLDD 275
>04_03_0150 + 11877714-11878487,11880928-11881245
Length = 363
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 32 GSIVVTLAEGLLDEGRCMITDNY--YTSDPLTEFMFARKSHLCGTVNKKRRGLPKERRRE 89
G VV L G L+ G I D++ D + R+SH G V + G+ + R+RE
Sbjct: 302 GQGVVVLTRGSLEGGADGIGDDFDGVIKDGVGSEGGGRRSHGGGRVRRPAAGVERRRKRE 361
>11_06_0237 -
21606240-21606395,21606499-21606706,21607565-21607697,
21607775-21607904,21607999-21608092,21609258-21609652
Length = 371
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 32 GSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMFARKSHL 71
G I +A L EG +I ++ ++ +TE MF + HL
Sbjct: 32 GFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHL 71
>06_03_0039 +
15791968-15792036,15793317-15793847,15799797-15800105,
15800256-15800772,15800964-15801163,15801303-15801398
Length = 573
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 34 IVVTLAEGLLDE--GRCMITDNYYTSDPLTEFMFARKSHLC 72
++ ++ +LDE G ++TD TSD LT F+ AR H C
Sbjct: 393 LIALMSAIVLDEHPGTTVVTDAR-TSDGLTRFIQARGGHHC 432
>04_03_0442 -
15967204-15967501,15967954-15968126,15968581-15968716,
15969064-15969288,15969792-15970053,15970062-15970169,
15970337-15970595,15971188-15971199
Length = 490
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 10 EVYTWGYQIYNDQSVQVFGLDTGSIVVTLAEGLLDE 45
E YTW Y +Y+++ + + IVV + LLD+
Sbjct: 234 ECYTWSYAVYHEEELSFARMLFAKIVVIIT--LLDD 267
>02_03_0187 -
16166365-16166571,16166665-16166962,16167197-16167524,
16167990-16168157,16168803-16168858,16168991-16169076,
16169846-16169977
Length = 424
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 19 YNDQSVQVFGLDTGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEF 63
YN ++ + GLDT I+ + + L DE I +Y DP E+
Sbjct: 350 YNHRNAEKLGLDTSEILPHVFKTLTDEFCGFI--RHYVIDPTGEY 392
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 6 LWSAEVYTWGYQIYNDQSVQVFGLDTGSIVVTLAEGLLD 44
L +VY W + ++FG + G IV ++ EG+ D
Sbjct: 46 LCHTDVYFWEAKGQTPVFPRIFGHEAGGIVESVGEGVTD 84
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 9 AEVYTWGYQIYNDQSVQVFGLDTGSIVVTLAEGLLD-EGRCMITDNYYTSDPLTEFMFAR 67
++V W D ++FG + +V ++ EG+ + E + + + +
Sbjct: 665 SDVTQWQSTAQTDLFPRIFGHEASGVVESVGEGVTEFEVGDHVLTVFIGECMSCKHCVSG 724
Query: 68 KSHLCGTVNKKRRGLPKERRREKLSI 93
KS++C + +RRG+ ++ + S+
Sbjct: 725 KSNMCQKLGLERRGVMHSDQKTRFSL 750
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,058
Number of Sequences: 37544
Number of extensions: 107941
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 9
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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