GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000463-TA|BGIBMGA000463-PA|undefined
         (114 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071690-1|AAL49312.1|  443|Drosophila melanogaster RH11377p pro...    27   5.9  
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    27   5.9  
AF277391-1|AAG17400.1|  358|Drosophila melanogaster alpha/epsilo...    27   5.9  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    27   5.9  
AE014134-1453|AAF52634.1|  443|Drosophila melanogaster CG7851-PA...    27   5.9  

>AY071690-1|AAL49312.1|  443|Drosophila melanogaster RH11377p
           protein.
          Length = 443

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 27  FGLDTGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMFARKSHLC 72
           F      ++  +  G+L    C   + +Y  DP +EF FA   H+C
Sbjct: 295 FAFAIPGMIFAILIGMLSAVLCFQHEKFY--DPHSEFFFANIFHIC 338


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
           depedent uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)

Query: 81  GLPKERRREKLSILAAHETI 100
           GLP  R+R+KLSIL  H TI
Sbjct: 112 GLPNNRKRQKLSIL-EHNTI 130


>AF277391-1|AAG17400.1|  358|Drosophila melanogaster
           alpha/epsilon-sarcoglycan-likeprotein SCG-ALPHA/EPSILON
           protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 27  FGLDTGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMFARKSHLC 72
           F      ++  +  G+L    C   + +Y  DP +EF FA   H+C
Sbjct: 295 FAFAIPGMIFAILIGMLSAVLCFQHEKFY--DPHSEFFFANIFHIC 338


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
           protein.
          Length = 1738

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)

Query: 81  GLPKERRREKLSILAAHETI 100
           GLP  R+R+KLSIL  H TI
Sbjct: 112 GLPNNRKRQKLSIL-EHNTI 130


>AE014134-1453|AAF52634.1|  443|Drosophila melanogaster CG7851-PA
           protein.
          Length = 443

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 27  FGLDTGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMFARKSHLC 72
           F      ++  +  G+L    C   + +Y  DP +EF FA   H+C
Sbjct: 295 FAFAIPGMIFAILIGMLSAVLCFQHEKFY--DPHSEFFFANIFHIC 338


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,251,292
Number of Sequences: 52641
Number of extensions: 191092
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 7
length of query: 114
length of database: 24,830,863
effective HSP length: 75
effective length of query: 39
effective length of database: 20,882,788
effective search space: 814428732
effective search space used: 814428732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)