Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000462-TA|BGIBMGA000462-PA|IPR009832|Protein of unknown
function DUF1397
(227 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 29 2.3
11_01_0627 - 5047751-5047758,5047799-5048015,5048759-5049646 28 5.4
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 5.4
10_08_0484 + 18232889-18232945,18233025-18233151,18233243-182333... 28 7.1
06_03_0592 + 22585546-22588573,22588680-22589032 28 7.1
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 28 7.1
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 27 9.4
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853... 27 9.4
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 20 FSQITAVVTSQCTKNNA---ED---KVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 73
FSQ T V+ +Q + + +D K V A R++G L GLV ++V + + E+KP+
Sbjct: 109 FSQFTVVIATQLPERSLLKLDDICRKANIVLVAARSYG--LTGLVRISVKEHNVIESKPD 166
Query: 74 GALDEV 79
LD++
Sbjct: 167 HFLDDL 172
>11_01_0627 - 5047751-5047758,5047799-5048015,5048759-5049646
Length = 370
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 161 LKQSFPTVESANNLSLVE-KCAKVDEMTSCIVKSLEECSTP 200
LKQ+FP NL +VE KC + DE + ++K L + S P
Sbjct: 318 LKQAFPF----KNLKIVEIKCHEGDERVNTVLKILSQNSVP 354
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 67 IEEAKPNGALDEVF-KKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNSTNQLID 125
I+ A P+G + F KK + Q +S ++Q + +Y N+A+ +TN L+D
Sbjct: 421 IDNASPSGFNTQAFLKKRSRATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLD 480
>10_08_0484 +
18232889-18232945,18233025-18233151,18233243-18233356,
18233844-18234042,18234160-18234205,18234380-18234455,
18234584-18234816
Length = 283
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 57 LVDLNVLKTEIEEAKPNG--ALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHIN 114
L +L LK + EAK NG + + K+ DK L G I+ +G+ +N
Sbjct: 99 LEELKKLKDFVVEAKQNGMAVVPSLVKRMLDKGMILFGFIN--------LLGDSGVKQVN 150
Query: 115 DAQNSTNQLIDFVCYK 130
+ S N+ + F C K
Sbjct: 151 ELTASQNKRVKFACDK 166
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 11 FAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEA 70
F G + F ++ ++ ++NN K+P+ F N L L DLN+ +
Sbjct: 667 FFVGGIPQSFMKLVSIKEMDISRNNLSGKIPQ-------FLNLLSSLHDLNLSFNNFDGV 719
Query: 71 KPNGALDEV 79
P G + ++
Sbjct: 720 IPTGGVFDI 728
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 16 LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 59
+AD QI+A V + T A + V+ A ++G+C+ L +
Sbjct: 1320 MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAE 1363
>04_04_0285 -
24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 27.5 bits (58), Expect = 9.4
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 55 KGLVDLNVLKT-EIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHI 113
KG D +V++T ++E A + ++ + KK K+ S + G + G ++ +
Sbjct: 400 KGRHDESVVETSKMESASTSKSVAKKRKK--TKNVSSVDMASLDIAGEKDQCGTKHVQFV 457
Query: 114 NDAQNSTNQL----IDFVCYKD------GDRI---ALFIAEGGPECFQQKTENLKTCFL- 159
+DAQ +TN + ID + +KD GD + L G + ++T L
Sbjct: 458 SDAQATTNSVADKGIDDLVHKDYKDPTMGDMVNSSELVACAGESTKVRHDESGIETSKLE 517
Query: 160 -NLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSLEECSTPTPANMAESLIK 211
+ K +S + S +K K +++S ++SL+ E+L+K
Sbjct: 518 KSSKSILEETQSVGHTSQQKKRKKAKKVSSVDMESLDISGEKDQCGYGENLVK 570
>01_01_0014 +
84379-84600,84737-84830,84935-85086,85212-85299,
85348-86681,87291-87398,87500-87583
Length = 693
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 143 GPECFQQKTENLKT---CFLN-LKQSFPTVESANNLSLVEKCAKVDEMTSCIVKS---LE 195
G E Q ++ L T CF K P+V S N L + A +DE + + L+
Sbjct: 431 GDEVHQCQSPELGTSDVCFGGPTKVVIPSVNSHNALEQCDSMASLDEPLLDVEMTCIPLD 490
Query: 196 ECSTPTPANMAESLIKFMRKDSPCHTALPKT 226
C+T P ++ E+ + C T P T
Sbjct: 491 PCATGVPYSVKETPAGVLCTSDHCSTGTPLT 521
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,400,810
Number of Sequences: 37544
Number of extensions: 245711
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 9
length of query: 227
length of database: 14,793,348
effective HSP length: 80
effective length of query: 147
effective length of database: 11,789,828
effective search space: 1733104716
effective search space used: 1733104716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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