Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000462-TA|BGIBMGA000462-PA|IPR009832|Protein of unknown
function DUF1397
         (227 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063784-1|AAH63784.1|  643|Homo sapiens SF4 protein protein.          31   4.4  
AY072917-1|AAL68961.1|  641|Homo sapiens RNA-binding protein spl...    31   4.4  
AF521128-1|AAN77123.1|  645|Homo sapiens splicing factor 4 protein.    31   4.4  
AC004475-1|AAC08052.1|  608|Homo sapiens F23858_1 protein.             31   4.4  
AK096419-1|BAC04782.1|  520|Homo sapiens protein ( Homo sapiens ...    30   7.7  

>BC063784-1|AAH63784.1|  643|Homo sapiens SF4 protein protein.
          Length = 643

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 133 DRIALFIAEGGPECFQQKTENLKT----CFLNLKQSFPTVESANNLSLVEKCAKVDEMTS 188
           +++A F+AEGGPE  +   E+ K      FL+ K S   +     ++ + K A+  +  S
Sbjct: 191 EKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYYRKKVAEIRKEAQKSQAAS 250

Query: 189 CIVKSLEECSTPTPANMAESLIKFMRKDSP 218
             V   E+       N+AE L +F+    P
Sbjct: 251 QKVSPPED---EEVKNLAEKLARFIADGGP 277


>AY072917-1|AAL68961.1|  641|Homo sapiens RNA-binding protein splice
           variant a protein.
          Length = 641

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 133 DRIALFIAEGGPECFQQKTENLKT----CFLNLKQSFPTVESANNLSLVEKCAKVDEMTS 188
           +++A F+AEGGPE  +   E+ K      FL+ K S   +     ++ + K A+  +  S
Sbjct: 189 EKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYYRKKVAEIRKEAQKSQAAS 248

Query: 189 CIVKSLEECSTPTPANMAESLIKFMRKDSP 218
             V   E+       N+AE L +F+    P
Sbjct: 249 QKVSPPED---EEVKNLAEKLARFIADGGP 275


>AF521128-1|AAN77123.1|  645|Homo sapiens splicing factor 4 protein.
          Length = 645

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 133 DRIALFIAEGGPECFQQKTENLKT----CFLNLKQSFPTVESANNLSLVEKCAKVDEMTS 188
           +++A F+AEGGPE  +   E+ K      FL+ K S   +     ++ + K A+  +  S
Sbjct: 193 EKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYYRKKVAEIRKEAQKSQAAS 252

Query: 189 CIVKSLEECSTPTPANMAESLIKFMRKDSP 218
             V   E+       N+AE L +F+    P
Sbjct: 253 QKVSPPED---EEVKNLAEKLARFIADGGP 279


>AC004475-1|AAC08052.1|  608|Homo sapiens F23858_1 protein.
          Length = 608

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 133 DRIALFIAEGGPECFQQKTENLKT----CFLNLKQSFPTVESANNLSLVEKCAKVDEMTS 188
           +++A F+AEGGPE  +   E+ K      FL+ K S   +     ++ + K A+  +  S
Sbjct: 156 EKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYYRKKVAEIRKEAQKSQAAS 215

Query: 189 CIVKSLEECSTPTPANMAESLIKFMRKDSP 218
             V   E+       N+AE L +F+    P
Sbjct: 216 QKVSPPED---EEVKNLAEKLARFIADGGP 242


>AK096419-1|BAC04782.1|  520|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39100 fis, clone NTONG2001587, moderately
           similar to KERATIN, TYPE II CYTOSKELETAL 4. ).
          Length = 520

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 148 QQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCI 190
           Q +TENLK    +L+ +    E    L+L +  AKVDE+ + +
Sbjct: 340 QSQTENLKKQNASLQAAITDAEQRGELALKDAQAKVDELEAAL 382


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,509,114
Number of Sequences: 224733
Number of extensions: 1133299
Number of successful extensions: 3037
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3031
Number of HSP's gapped (non-prelim): 10
length of query: 227
length of database: 73,234,838
effective HSP length: 87
effective length of query: 140
effective length of database: 53,683,067
effective search space: 7515629380
effective search space used: 7515629380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)