GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000462-TA|BGIBMGA000462-PA|IPR009832|Protein of unknown
function DUF1397
         (227 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           25   0.37 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.37 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   7.9  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   7.9  

>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 148 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 178
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 35


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 148 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 178
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 135


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 20  FSQITAVVTSQCTKNNAEDKVPEV 43
           F +I   + S  + N  +DK+P++
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQI 226


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 20  FSQITAVVTSQCTKNNAEDKVPEV 43
           F +I   + S  + N  +DK+P++
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQI 226


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,250
Number of Sequences: 317
Number of extensions: 2015
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 227
length of database: 114,650
effective HSP length: 55
effective length of query: 172
effective length of database: 97,215
effective search space: 16720980
effective search space used: 16720980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)