GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000462-TA|BGIBMGA000462-PA|IPR009832|Protein of unknown
function DUF1397
         (227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    31   0.18 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.74 
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    28   1.3  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   5.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   6.9  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   9.2  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    25   9.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    25   9.2  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.2  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 150 KTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSLEECSTPTPANMAESL 209
           +T  LK   L  K SF   E+ N+  L  K  + D++TS   +S+E  +   PA+  +++
Sbjct: 168 RTSQLKLALLKRKLSFFR-EALNSAELEWKRVQQDQLTSASERSIENIADDIPASEPKAI 226

Query: 210 IK 211
           ++
Sbjct: 227 LE 228


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 32  TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 89
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS  
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 90  LKGCISSVLQ 99
           L+   + VL+
Sbjct: 97  LREKFAQVLE 106


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 56  GLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHIND 115
           GL  +N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +  
Sbjct: 85  GLKIVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGY 141

Query: 116 AQNSTNQLI 124
              ST++++
Sbjct: 142 DSRSTSEIL 150


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 144 PECFQQKTENLKTCFLNLKQSFPTV-------ESANNLS--LVEKCAKVDEMTSCIVKSL 194
           P+  +QK E+L    + + + FP V       + +N L+  LV   + V ++ + + + L
Sbjct: 7   PKSKRQKKESLNPTTIEIPEKFPLVNVQFRASDDSNELASLLVPGNSSVRQLEALLNQLL 66

Query: 195 EECSTPTPANMA 206
           E    P P N A
Sbjct: 67  ENSDDPVPYNFA 78


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 107 NEYANHINDAQNSTNQLIDFVCYKDGD 133
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 21  SQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVF 80
           SQ   VV+S  T N+   K+ E   + R+    +K +VD      + E AK      E+ 
Sbjct: 114 SQSQVVVSSNLTSNSEVSKLEEERLSTRSHSQEIKPIVDFG---PDEETAKELNT--ELK 168

Query: 81  KKYCDKSAQLKGC-ISSVLQGVRPCVGNEYANH-INDAQNSTNQL 123
            K+ +     +   I++VL+  +  +G+   ++ +N A  ST+ L
Sbjct: 169 GKFENSLLSFESFDIANVLKAGKKLLGSASRDYDVNPANYSTHYL 213


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 106 GNEYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEG 142
           G+   NH+ D    T  +  F+ Y D   I  F  +G
Sbjct: 207 GSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQG 243


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 127 VCYKDGDRIALFIAEGGPECFQQKTENLKTCFL-NLKQSFPTVESANN 173
           VCY+  D   + IA  GP+  + + +  KT  L  +  SF    ++NN
Sbjct: 11  VCYQPEDTTFIIIASNGPDVMRWRKD--KTVPLTEIVDSFQVFTTSNN 56


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 130 KDGDRIALF---IAEGGPECFQQK--TENLKTCFLNLKQSFPTVESANNLSLVEKCAKVD 184
           +D +RI  +   +AEG  +  Q+    E +KT     K   P   + N  +L  K  KVD
Sbjct: 130 EDDNRIPFYDLDVAEGAEDDLQEDFHVEGMKTKS-GRKIQRPVAYNPNATALKRKSRKVD 188

Query: 185 EMTSCIV 191
            +T C V
Sbjct: 189 MVTLCSV 195


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 89  QLKGCISSVLQGVRPCVG---NEYANHINDAQNSTNQLIDFVCYKD 131
           +L   I+  L  ++P +    N Y  HI  +  +  +L  F CYK+
Sbjct: 53  KLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIFNCYKE 98


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 80  FKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNSTNQLIDFVCYKDGDRIALFI 139
           FK Y D +  L    +  +     C+ +EY   +  + +S++Q    + Y++  R A  +
Sbjct: 13  FKFYIDTALLLN---AEFISSFTNCINSEYNGKVKISYSSSSQQFKVIVYEEHKREAFSL 69

Query: 140 AE 141
            E
Sbjct: 70  FE 71


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,938
Number of Sequences: 5004
Number of extensions: 40116
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 11
length of query: 227
length of database: 2,362,478
effective HSP length: 70
effective length of query: 157
effective length of database: 2,012,198
effective search space: 315915086
effective search space used: 315915086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)