GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000462-TA|BGIBMGA000462-PA|IPR009832|Protein of unknown
function DUF1397
         (227 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45761| Best HMM Match : PSP1 (HMM E-Value=5)                        31   0.59 
SB_53482| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                  31   0.78 
SB_52754| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                  31   0.78 
SB_32122| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                  31   0.78 
SB_8188| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                   31   0.78 
SB_48852| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                  31   0.78 
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            31   0.78 
SB_38079| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                  31   0.78 
SB_20211| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                  31   0.78 
SB_14197| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                  31   0.78 
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    31   1.0  
SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   7.3  
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)                    28   7.3  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_45761| Best HMM Match : PSP1 (HMM E-Value=5)
          Length = 236

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  + +  EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLSFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_53482| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 144

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_52754| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 347

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_32122| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 236

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_8188| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 149

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_48852| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 181

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22  QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
           Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 565 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 622

Query: 81  KK 82
           K+
Sbjct: 623 KR 624


>SB_38079| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 236

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_20211| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 186

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_14197| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 199

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 22 QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL-VDLNVLKTEIEEAKPNGALDEVF 80
          Q+   V ++  + ++E++VP +E A++    C + L  D+  +    EEAK   AL+EVF
Sbjct: 12 QVLEEVCAEDGEISSEEEVPSLEEAVKNAVRCFRPLRGDIRSVLAFEEEAK--NALEEVF 69

Query: 81 KK 82
          K+
Sbjct: 70 KR 71


>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 29  SQCTKNNAEDKV-PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKS 87
           + CT++N  D++  E  A  +   + L   +     K   ++A P G LD+  +K C K+
Sbjct: 327 ADCTRDNTRDRIIAECNAVRQALQDLLSEYMSHAGGK---KKAVPGGPLDKAIEKMCSKT 383

Query: 88  AQLKG 92
           + L+G
Sbjct: 384 SGLRG 388


>SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 129 YKDGDRIALFIAEGGPECFQQKTENLKTCFLNLKQSFPTVESANNLS 175
           Y  G +I  F+A+   +C  + TENL+    N +    T E+A  LS
Sbjct: 46  YLHGFKIESFVAQNPFDCSIKCTENLRCQSFNYQSESSTSENACELS 92


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 14  GVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNV-LKTEIEE 69
           G+  D +S I  +V      N A D + EVE A R        L D N  LKT + E
Sbjct: 299 GIGVDLYSIINTLVECDKKSNQAADAIKEVEKAEREVSKSETELRDFNTELKTFMRE 355


>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
          Length = 545

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 182 KVDEMTSCIVKSLEECST--PTPANMAESLIKFMRKDSPC 219
           K +    CIV  L  CS+    PAN+   +I+F+ +D  C
Sbjct: 57  KREAYVKCIVSLLVRCSSNQKLPANLYPPIIEFILRDVEC 96


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 51  GNCLKGLVDLNVLKTEIEE 69
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,635,541
Number of Sequences: 59808
Number of extensions: 293855
Number of successful extensions: 733
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 16
length of query: 227
length of database: 16,821,457
effective HSP length: 80
effective length of query: 147
effective length of database: 12,036,817
effective search space: 1769412099
effective search space used: 1769412099
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)