Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000462-TA|BGIBMGA000462-PA|IPR009832|Protein of unknown
function DUF1397
(227 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 33 0.12
At5g12370.1 68418.m01455 exocyst complex component Sec10-related... 32 0.28
At4g15830.1 68417.m02408 expressed protein 32 0.37
At1g22060.1 68414.m02759 expressed protein 31 0.48
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi... 29 2.6
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr... 29 3.4
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 28 4.5
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 28 4.5
At5g41050.1 68418.m04990 expressed protein 28 6.0
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 28 6.0
At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase fa... 27 7.9
At1g77080.2 68414.m08975 MADS-box protein AGL27-II (AGL27) / MAD... 27 7.9
At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase fa... 27 7.9
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 150 KTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSLEE 196
+ EN T + + P V AN S++EKC + E+ S V++L E
Sbjct: 887 RAENYNTSAVEFLRRLPGVSDANYRSIMEKCKSLAELASLPVETLAE 933
>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
low similarity to SP|O00471 Exocyst complex component
Sec10 (hSec10) {Homo sapiens}
Length = 858
Score = 32.3 bits (70), Expect = 0.28
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 41 PEVEAALRTFGNCLKGLVD--------LNVLKTEI--EEAKPNGALDEVFKKYCDKSAQL 90
PEV+ L F + K LVD LN LK E+ +++K L E + A+L
Sbjct: 87 PEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEGVDGLFESFARL 146
Query: 91 KGCISSVLQGVRPCVGNEYANHINDAQNST-NQLIDFVCY 129
G ISSV Q +G+ + DAQ T +Q ID + Y
Sbjct: 147 DGRISSVGQTAAK-IGDHLQS--ADAQRETASQTIDLIKY 183
>At4g15830.1 68417.m02408 expressed protein
Length = 296
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 18 DDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALD 77
++ + ++ +Q + DK+PE A R+ N L N EE G+
Sbjct: 217 NEMEEFGMILLAQMAADQLSDKLPEAREAARSMVNSLFEKFTWN------EEEDEEGSKQ 270
Query: 78 EVFKKYCDKS 87
E +KK+C+K+
Sbjct: 271 EAWKKFCEKN 280
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 31.5 bits (68), Expect = 0.48
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 108 EYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGGPECFQQKTENLKTC---FLNLKQS 164
EY + + + +L F C D +F C + E L C L ++
Sbjct: 1334 EYVRNAHRESSFIEEL--FQCLMAADVQLIFTKIQSDICINEFAEQLSCCSNSHLEFQKK 1391
Query: 165 FPTVESANNLSLVEKCAKVDEMTSCIVKSLEECSTPTPANMAESLIKFMRKD 216
+ VESA N LV + +DE ++ +LE + ++MA+S R D
Sbjct: 1392 YTDVESALNHCLVNETRYMDENNQLLI-NLEVLKSELESSMAKSRALADRND 1442
>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 879
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 8 ITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 67
IT F VL + + V + N EDK+PE+++ G G +D+ V +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798
Query: 68 EE 69
+E
Sbjct: 799 DE 800
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 76 LDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNS 119
LD F+ + + G I +LQG+R + +EY + N+ NS
Sbjct: 136 LDREFESILRRRRRSSGNILQLLQGIRAGIASEYESSDNNWDNS 179
>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;annotation temporarily based on
supporting cDNA gi|17224394|gb|AF246291.1|AF246291
Length = 637
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 148 QQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSLEECSTPTPANMAE 207
+++ E L F+ L++ P++ + +S+++ + + V+ LE C T
Sbjct: 447 KKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQELESCRESTDTETRG 506
Query: 208 SLIKFMRKDSPC 219
++ M++ PC
Sbjct: 507 TMT--MKRKKPC 516
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 151 TENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKS 193
TE L ++L + + V+ + +LSL E C K+ + IV+S
Sbjct: 52 TEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRS 94
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 16 LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 59
+AD QI+AV + T +A + V A ++G+C L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486
>At5g41050.1 68418.m04990 expressed protein
Length = 172
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 57 LVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDA 116
L+ LN L + AKPNG + + YCD + S P V N A
Sbjct: 14 LLSLNSLSLKHSSAKPNGKITVMGLVYCDVCSNNSFSNHSYF---IPGVEVRIICRFNSA 70
Query: 117 QNSTNQLIDFVCYKDGDRIALF 138
+ T ++I F + + + L+
Sbjct: 71 SSRTREMITFSANRTTNELGLY 92
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 147 FQQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSLEECST 199
+++ E + C + L++ +ES +N ++ E C+KVD + + + +E+ ++
Sbjct: 595 YKEMLEESEKCRVLLEEQISQLESDSNENIRELCSKVDIAYAKLAEEVEKTAS 647
>At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
musculus [SP|P98200, SP|P70704], {Bos taurus} SP|Q29449;
contains InterPro accession IPR005834: Haloacid
dehalogenase-like hydrolase
Length = 1202
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 206 AESLIKFMRKDSPCHTALPKTD 227
A L KF R + CHTA+P+TD
Sbjct: 509 AAVLQKFFRLLAVCHTAIPETD 530
>At1g77080.2 68414.m08975 MADS-box protein AGL27-II (AGL27) / MADS
affecting flowering 1 (MAF1) contains similarity to MADS
box transcription factor GI:3688591 from [Triticum
aestivum]; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 192
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 132 GDRIALFIAEGGPECFQQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIV 191
GD I P+CF+ E +L K+ TV+S V+ VD + S +
Sbjct: 60 GDEIEALFKPEKPQCFELDLEEKIQNYLPHKELLETVQSKLEEPNVDN-VSVDSLIS-LE 117
Query: 192 KSLEECSTPTPANMAESLIKFM 213
+ LE + + A AE +++++
Sbjct: 118 EQLETALSVSRARKAELMMEYI 139
>At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1)
(Chromaffin granule ATPase) from {Homo sapiens}
SP|Q9Y2Q0, {Mus musculus} SP|P98200, {Bos taurus}
SP|Q29449; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase; ESTs gb|T45045 and
gb|AA394473 come from this gene
Length = 1203
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 206 AESLIKFMRKDSPCHTALPKTD 227
A L KF R + CHTA+P+TD
Sbjct: 508 AAVLQKFFRLLAVCHTAIPETD 529
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,338,227
Number of Sequences: 28952
Number of extensions: 212595
Number of successful extensions: 625
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 16
length of query: 227
length of database: 12,070,560
effective HSP length: 79
effective length of query: 148
effective length of database: 9,783,352
effective search space: 1447936096
effective search space used: 1447936096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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