Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000461-TA|BGIBMGA000461-PA|undefined
         (377 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    27   0.29 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.6  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 320 HP-SVSS---GVAYQPPVSRHLSIHPQQHNNMQGPKPGSITQGYPVQQSNQNPNMYPSRH 375
           HP S+SS    + +  P+S HL   P    +     P SI +  P  +S  +  MY   H
Sbjct: 335 HPLSLSSDHQAMLHHNPMSHHLKQEPSGFTSSN--HPFSINRLLPTAESKADIKMYADMH 392

Query: 376 RY 377
           +Y
Sbjct: 393 QY 394


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 340 HPQQHNNMQGPKPGSITQGYPVQQSNQNPNMYPSR 374
           HP + +    P P S     P Q+++ +   Y SR
Sbjct: 65  HPWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSR 99


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,245
Number of Sequences: 317
Number of extensions: 2156
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 377
length of database: 114,650
effective HSP length: 58
effective length of query: 319
effective length of database: 96,264
effective search space: 30708216
effective search space used: 30708216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)