GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000461-TA|BGIBMGA000461-PA|undefined
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225...    32   0.66 
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    30   2.6  
08_02_0080 + 12024505-12024942                                         29   8.1  

>05_07_0257 +
           28719980-28720220,28721412-28721455,28722521-28722590,
           28722693-28722816,28723420-28724060,28725100-28725364,
           28725434-28725713,28726042-28726209,28726867-28727358,
           28727432-28727689
          Length = 860

 Score = 32.3 bits (70), Expect = 0.66
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 316 LSDAHPSVSSGVAYQPPVSRHLSIHP 341
           L+ + PS S+ +A  PP+ +HL++HP
Sbjct: 623 LNQSQPSTSTSIASGPPLPQHLTLHP 648


>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 312 VLIGLSDAHPSVSSGVAYQPPVSRH-LSIHPQQHNNMQGPKPGSITQGYPVQQSNQNPNM 370
           VL+    +  S +  + +Q P  +H + +   Q    Q P P SI    P+QQS+  P  
Sbjct: 414 VLLQKGTSRTSTTQLINHQAPSLQHAVKVETTQQQQQQQP-PKSIKPA-PIQQSSAYPQQ 471

Query: 371 YPSRHRY 377
           YP +H++
Sbjct: 472 YP-KHQH 477


>08_02_0080 + 12024505-12024942
          Length = 145

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 162 GQQMVRPMQSGVK-RPRSPSPTYALYAHRLHQPPMKHQPVYSDHKV 206
           G   + P QS VK      +PT  LY  R   PPM++  V   H++
Sbjct: 100 GSNSLSPKQSNVKVADIILAPTEGLYKARTKLPPMRYVMVEEGHRI 145


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,857,866
Number of Sequences: 37544
Number of extensions: 256959
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 3
length of query: 377
length of database: 14,793,348
effective HSP length: 83
effective length of query: 294
effective length of database: 11,677,196
effective search space: 3433095624
effective search space used: 3433095624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)