GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000461-TA|BGIBMGA000461-PA|undefined
         (377 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            31   2.0  
SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3)                       31   2.0  
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  30   2.7  
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  

>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 176 PRSPSPTYALYAHRLHQPPMKHQPVYSDHKVEDGR 210
           PR+P PTY  +  R+H  P    P YS  +V   R
Sbjct: 409 PRTPVPTY--FTPRIHHSPRTSLPAYSTPRVHHSR 441


>SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3)
          Length = 396

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 332 PVSRHLSIHPQQHNNMQGPKPGSITQGYPVQQSNQNPNMYPSRHRY 377
           P  RH S  P+     Q PKP    +G+P  Q  Q PN+ P  + Y
Sbjct: 239 PNVRHPSSAPRNKEVQQSPKP----RGHPETQVPQQPNILPPLNSY 280


>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 319 AHPSVSSGVAYQPPVSRH-LSIHPQQHNNMQGPK-PGSITQGYPVQQSNQ 366
           +HPS+    AY P  ++  +S  P Q NNM     P   + GYP  + NQ
Sbjct: 496 SHPSIPEQQAYNPYGNQQVMSQAPPQVNNMSMQNMPAYSSSGYPNMRGNQ 545


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 161 HGQQMVRPMQSGVKRPRSPSPTYALYAH--RLHQ---PPMKHQPV 200
           H     R +   ++ PR+P PT+A Y H  R+H     P  H PV
Sbjct: 108 HTPTRARRVHQRIQTPRTPRPTHAEYTHARRVHTRRVHPRLHTPV 152


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 161 HGQQMVRPMQSGVKRPRSPSPTYALYAH--RLHQ---PPMKHQPV 200
           H     R +   ++ PR+P PT+A Y H  R+H     P  H PV
Sbjct: 108 HTPTRARRVHQRIQTPRTPRPTHAEYTHARRVHTRRVHPRLHTPV 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,970,523
Number of Sequences: 59808
Number of extensions: 283735
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 16
length of query: 377
length of database: 16,821,457
effective HSP length: 83
effective length of query: 294
effective length of database: 11,857,393
effective search space: 3486073542
effective search space used: 3486073542
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)