GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000461-TA|BGIBMGA000461-PA|undefined
         (377 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    30   3.1  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    30   3.1  
AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical ...    30   3.1  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   5.4  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    28   9.4  

>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 331  PPVSRHLSIH---PQQHNNMQGPKPGSITQGYPVQQSNQNPNMYP 372
            PP   HL  H   PQ H +   P P ++ Q   V  +N NP   P
Sbjct: 1621 PPHHPHLQNHYHPPQNHTSATAPCPSAMVQLQAVSNNNVNPLHQP 1665


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 331  PPVSRHLSIH---PQQHNNMQGPKPGSITQGYPVQQSNQNPNMYP 372
            PP   HL  H   PQ H +   P P ++ Q   V  +N NP   P
Sbjct: 1782 PPHHPHLQNHYHPPQNHTSATAPCPSAMVQLQAVSNNNVNPLHQP 1826


>AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1a protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 330 QPPVSRHLSIHPQQHNNMQGPKPGSITQGYPVQQSNQNPNMY 371
           QP  S    ++PQ H+ M    PG +  G+P+QQ  Q P M+
Sbjct: 276 QPQYSHQQPMNPQHHSPMTMMAPGQMI-GHPIQQ--QRPPMH 314


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 327 VAYQPPVSRHLSIHPQQHNNMQGPKPGSITQGYPVQQSNQNPNMYP 372
           ++YQPP +  +  +PQQ  N Q   P   + G+P   + Q P   P
Sbjct: 1   MSYQPPPNGQMPGYPQQQFNQQ---PQFQSNGFPPPAAPQKPAQVP 43


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 8/93 (8%)

Query: 279 YAPAPQPPQMYLDMLKNRXXXXXXXXXXXXXXXVLIGLSDAHPSVSSGVAYQPPVSRHLS 338
           Y P PQ PQ Y  M   +                  G     P  S+G  Y PP S+   
Sbjct: 162 YPPPPQAPQNYQQMYHQQRAQQQQAGQQQAQGPPGYGPYGYAPQASTG--YPPPPSQQSP 219

Query: 339 IHPQQHNNMQGPKPGSITQGYPVQQSNQNPNMY 371
             PQ      GP P  +   YP     Q P  Y
Sbjct: 220 YAPQ-----AGPPP-QMRHQYPPHSQQQAPPGY 246


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 164 QMVRPMQSGVKRPRSPSPTYALYAHRLHQPPMKHQPVYSDHKVEDGRMGR 213
           Q VRP    V+    P+P      H++   P+ H+P   +  VE    G+
Sbjct: 296 QPVRPAPQPVQPSFQPAPAVQQQVHQVFTTPIPHRPFVPETFVEQVEAGQ 345


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,458,450
Number of Sequences: 27539
Number of extensions: 212001
Number of successful extensions: 586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 10
length of query: 377
length of database: 12,573,161
effective HSP length: 83
effective length of query: 294
effective length of database: 10,287,424
effective search space: 3024502656
effective search space used: 3024502656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)