GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000461-TA|BGIBMGA000461-PA|undefined
         (377 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56410.2 68416.m06274 expressed protein                             30   2.9  
At3g56410.1 68416.m06273 expressed protein                             30   2.9  
At2g25970.1 68415.m03117 KH domain-containing protein                  30   2.9  

>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 177 RSPSPTYALYAHRLHQPPMK-HQPVYSDHKVEDGRMGRPMTRAVLWNK 223
           RS +P +++Y+ R + P    H+  YS+H V   +      +++L NK
Sbjct: 311 RSETPHHSVYSERSYVPAAAPHRSTYSEHSVGISKSDTSSEKSILRNK 358


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 177 RSPSPTYALYAHRLHQPPMK-HQPVYSDHKVEDGRMGRPMTRAVLWNK 223
           RS +P +++Y+ R + P    H+  YS+H V   +      +++L NK
Sbjct: 264 RSETPHHSVYSERSYVPAAAPHRSTYSEHSVGISKSDTSSEKSILRNK 311


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 280 APAPQPPQMYLDMLKNRXXXXXXXXXXXXXXXVLIGLSDA-HPSVSSGVAYQPPVSRHLS 338
           AP   PP  Y  +                    L+  +DA  P V +G +Y    ++  S
Sbjct: 48  APTGLPPSSYNSVPPPMDEIQIAKQKAQEIAARLLNSADAKRPRVDNGASYDYGDNKGFS 107

Query: 339 IHPQQHNNMQGPKPGSITQGY 359
            +P +   M G  P SI   Y
Sbjct: 108 SYPSEGKQMSGTVPSSIPVSY 128


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,042,736
Number of Sequences: 28952
Number of extensions: 192146
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 3
length of query: 377
length of database: 12,070,560
effective HSP length: 82
effective length of query: 295
effective length of database: 9,696,496
effective search space: 2860466320
effective search space used: 2860466320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)