Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000460-TA|BGIBMGA000460-PA|undefined
         (160 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   2.2  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   6.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    20   8.8  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 76  PESSDESTDLPSLGLLSTASAEPLSD 101
           P  S +    PS+G+ S+A   PLS+
Sbjct: 13  PYPSTDQNPYPSIGVESSAFYSPLSN 38


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 72  DWELPESSDE 81
           DWE PE+ D+
Sbjct: 144 DWEYPEAKDK 153


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 91  LSTASAEPLSDSDLAF 106
           LS ASA+ LS+ DL++
Sbjct: 363 LSLASAQTLSELDLSW 378


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,459
Number of Sequences: 317
Number of extensions: 1093
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 160
length of database: 114,650
effective HSP length: 52
effective length of query: 108
effective length of database: 98,166
effective search space: 10601928
effective search space used: 10601928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)